View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10149_low_2 (Length: 345)

Name: NF10149_low_2
Description: NF10149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10149_low_2
NF10149_low_2
[»] chr1 (2 HSPs)
chr1 (11-345)||(5909882-5910216)
chr1 (17-345)||(5914379-5914703)


Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 11 - 345
Target Start/End: Complemental strand, 5910216 - 5909882
Alignment:
Q  11 cataggaatatatcttgtatatttgtgtgatcttcaaacttgcaggcagaaaaaggcatacaaattaaaggggtgttagaggaattaccaaaaccaaaat 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5910216 cataggaatatatcttgtatatttgtgtgatcttcaaacttgcaggcagaaaaaggcatacaaattaaaggggtgttagaggaattaccaaaaccaaaat 5910117  T
Q  111 catggaagccaaaggcaaacggaactaagatagaagtaccaaattttttaggcnnnnnnnttggtaaagaaatgaaaattggaatggtaaacatgaatga 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||| ||    
T  5910116 catggaagccaaaggcaaacggaactaagatagaagtaccaaattttttaggcgaaaaaattggtaaagaaatgaaaattggaatggtaaacatgaacga 5910017  T
Q  211 agacgacgacataagtgaatggaacatacatggagaaataataccaattaatttcgataaagtatcaaaatttttcaactggaaagatttatttcccgaa 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5910016 agacgacgacataagtgaatggaacatacatggagaaataataccaattaatttcgataaagtatcacaatttttcaactggaaagatttatttcccgaa 5909917  T
Q  311 tggatcgacgaagaagaagaaagcgaagttccaac 345  Q
    |||||||||||||||||||||||||||||||||||    
T  5909916 tggatcgacgaagaagaagaaagcgaagttccaac 5909882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 17 - 345
Target Start/End: Complemental strand, 5914703 - 5914379
Alignment:
Q  17 aatatatcttgtatatttgtgtgatcttcaaacttgcaggcagaaaaaggcatacaaattaaaggggtgttagaggaattaccaaaaccaaaatcatgga 116  Q
    |||| ||||| ||||||| |||||||||||| |||| ||| |||| |  ||||  |||| ||||  || || || |||||||||||| |||||||| |||    
T  5914703 aataaatcttttatatttttgtgatcttcaa-cttgtagggagaagatagcatgaaaatgaaagcagtattggaagaattaccaaaagcaaaatcaagga 5914605  T
Q  117 agccaaaggcaaacggaactaagatagaagtaccaaattttttaggcnnnnnnnttggtaaagaaatgaaaattggaatggtaaacatgaatgaagacga 216  Q
    | ||||||   || |||||||||||||||||||||| ||||||||||       | ||||| | ||| |||||||||||||| |||||| | ||||||||    
T  5914604 acccaaag---aatggaactaagatagaagtaccaagttttttaggcgaaaaaatcggtaagggaattaaaattggaatggtgaacatggacgaagacga 5914508  T
Q  217 cgacataagtgaatggaacatacatggagaaataataccaattaatttcgataaagtatcaaaatttttcaactggaaagatttatttcccgaatggatc 316  Q
    |||  |||| ||||||||| |||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  5914507 cgatgtaagcgaatggaacgtacatggagaaacaataccaattaatttcgacaaagtatcacaatttttcaactggacagatttatttcccgaatggatc 5914408  T
Q  317 gacgaagaagaagaaagcgaagttccaac 345  Q
    |||||||||||||||||||| ||||||||    
T  5914407 gacgaagaagaagaaagcgatgttccaac 5914379  T

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