View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10149_low_3 (Length: 302)
Name: NF10149_low_3
Description: NF10149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10149_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 290
Target Start/End: Original strand, 16270438 - 16270709
Alignment:
| Q |
19 |
cggacatggatgtagtctttcttaggatgtggctcatcactagtttcttccgcatgctttcctgaactgttttcttctcctttactgtttcctgatgtct |
118 |
Q |
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| T |
16270438 |
cggacatggatgtagtctttcttaggatgtggctcatcactagtttcttccgcatgctttcctgaactgttttcttctcctttactgttccctgatgtct |
16270537 |
T |
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| Q |
119 |
tactcctttttccgtcaccaccgtcatcatcctgcacaaactcaaattcaatacctctactccaataacaaaactaaaattccaaccaaaaaacaagata |
218 |
Q |
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|||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||| |
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| T |
16270538 |
tactcctttttccgtcaccaccatcatcattctgcacaaagtcaaattcaatacctctactccaataacaagacttaaattccaaccaaaaaacaatata |
16270637 |
T |
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| Q |
219 |
gcaatttgaatagacagatccattcttcatattataatagcaaattgcacattattttgagtctgaactctc |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
16270638 |
gcaatttgaatagacagatccattcttcatattataataccaaattgcacattattttgagtctgaactctc |
16270709 |
T |
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