View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10149_low_5 (Length: 249)
Name: NF10149_low_5
Description: NF10149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10149_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 38310301 - 38310059
Alignment:
| Q |
1 |
atataaccaagttaaaaacaagtctaccattacaaaatataaaaatctaagtccgccagtaagtccaaaaaacatagcctaacaaccatatatagtttta |
100 |
Q |
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| T |
38310301 |
atataaccaagttaaaaacaagtctaccattacaaaatataaaaatctaagtccgccagtaagtccaaaaaacatagcctaacaaccatatatagtttta |
38310202 |
T |
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| Q |
101 |
attttgcaaaccataa---caaaacaaacatcacaaaacaaagttaaataaagacaagataatcaattgtcatcttcaaaatcaaaatcagtagatgctt |
197 |
Q |
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| T |
38310201 |
attttgcaaaccataaagccaaaacaaacatcacaaaacaaagttaaataaagacaagataatcaattgtcatcttcaaaatcaaaatcagtagatgctt |
38310102 |
T |
|
| Q |
198 |
gctccgtttgtacatcaccatcaactttcttcattgtttcttc |
240 |
Q |
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| T |
38310101 |
gctccgtttgtacatcaccatcaactttcttcattgtttcttc |
38310059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 38307475 - 38307431
Alignment:
| Q |
61 |
aagtccaaaaaacatagcctaacaaccatatatagttttaatttt |
105 |
Q |
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| T |
38307475 |
aagtctaaaaaacataacctaacaaccgtatatagttttaatttt |
38307431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 105
Target Start/End: Complemental strand, 38314859 - 38314818
Alignment:
| Q |
64 |
tccaaaaaacatagcctaacaaccatatatagttttaatttt |
105 |
Q |
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| T |
38314859 |
tccagaaaacataacctaacaaccatatatagtcttaatttt |
38314818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 164
Target Start/End: Original strand, 38849083 - 38849177
Alignment:
| Q |
73 |
catagcctaacaaccatatatagttttaattttgcaaaccataa---caaaacaaacatcacaaaacaaagttaaataaagacaagataatcaat |
164 |
Q |
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|||| ||||||||||| |||||||||||||||| ||||||||| ||||| |||||| | ||| |||||||||||||| ||||| ||||||| |
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| T |
38849083 |
cataacctaacaaccaaatatagttttaattttttaaaccataaatccaaaataaacatgataaaccaaagttaaataaatacaagcaaatcaat |
38849177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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