View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10149_low_7 (Length: 242)
Name: NF10149_low_7
Description: NF10149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10149_low_7 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 20 - 242
Target Start/End: Original strand, 43173713 - 43173935
Alignment:
| Q |
20 |
acattatgcatcttgaaaatcgtccacttgagttttctaatatcacacatcatgcaagtgtgactcagtgccttgggtccattggtggtaatgtttggta |
119 |
Q |
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| T |
43173713 |
acattatgcatcttgaaaatcgtccacttgagttttctaatatcacacatcatgcaagtgtgactcagtgccttgggtccattggtggtaatgtttggta |
43173812 |
T |
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| Q |
120 |
tcttggagtggctaagccatccattgttgattccaatgaaatcaaggatgacttgggtaagacagtcgtgaagtcgcgcagcggtcatttttatgtgcct |
219 |
Q |
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| T |
43173813 |
tcttggagtggctaagccatccattgttgattcaaatgaaatcaaggatgacttgggtaagacagtcgtgaagtcgcgcagcggtcatttttatgtgcct |
43173912 |
T |
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| Q |
220 |
cctgccattgaggatgtccaggt |
242 |
Q |
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| T |
43173913 |
cctgccattgaggatgtccaggt |
43173935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 23 - 239
Target Start/End: Original strand, 43176549 - 43176765
Alignment:
| Q |
23 |
ttatgcatcttgaaaatcgtccacttgagttttctaatatcacacatcatgcaagtgtgactcagtgccttgggtccattggtggtaatgtttggtatct |
122 |
Q |
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| T |
43176549 |
ttatgcatcttgaacatttcccactaaagttttctagaatcacacatcatgcaagggtgactcagtgccttgggtccattggtggtaacgtttggtatct |
43176648 |
T |
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| Q |
123 |
tggagtggctaagccatccattgttgattccaatgaaatcaaggatgacttgggtaagacagtcgtgaagtcgcgcagcggtcatttttatgtgcctcct |
222 |
Q |
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| T |
43176649 |
tggagtagctaagccatcagttgttgatccaaatgaaatcaaggatgactcagaaaacactgtcgcgaagtcgtgcggcggtcatttttacgttcctccc |
43176748 |
T |
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| Q |
223 |
gccattgaggatgtcca |
239 |
Q |
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| T |
43176749 |
cccgttgaggacgtcca |
43176765 |
T |
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