View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10149_low_8 (Length: 240)
Name: NF10149_low_8
Description: NF10149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10149_low_8 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 240
Target Start/End: Original strand, 21103385 - 21103610
Alignment:
| Q |
16 |
cattaacgttgacataatattgca-gaaaacttgttgaaatatcatcctcgttttgtgcatatattctaaaatcaatattaaaacattagtcaataacaa |
114 |
Q |
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| T |
21103385 |
cattaacgttgacataatattgcaagaaaacttgttgaaatatcatcctcgttttgtgcatatattctaaaatcaatattaaaacattagtcaataacaa |
21103484 |
T |
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| Q |
115 |
attaaattttgccaactatcgaaaagtttataatctttgtaattaaattaaatattgaaatgccctcttggtatttgtgaatctagtaataaacgtcaat |
214 |
Q |
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| T |
21103485 |
attaaattttgccaactatcgaaaagtttataatctttgtaattaaattaaatattgaaatgccctcttggtatttgtgaatctagtaataaatgtcaat |
21103584 |
T |
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| Q |
215 |
attataatagatatgcatcgtcctcc |
240 |
Q |
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| T |
21103585 |
attataatagatatgcatcgtcctcc |
21103610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 166
Target Start/End: Original strand, 21105293 - 21105370
Alignment:
| Q |
89 |
aatattaaaacattagtcaataacaaattaaattttgccaactatcgaaaagtttataatctttgtaattaaattaaa |
166 |
Q |
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|||||||||| |||||||||||| |||||||||||||||||| | |||||| |||||||||||||||||||||| |
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| T |
21105293 |
aatattaaaagcatagtcaataacacattaaattttgccaactactgccaagtttgtaatctttgtaattaaattaaa |
21105370 |
T |
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