View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10150_high_2 (Length: 358)
Name: NF10150_high_2
Description: NF10150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10150_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 153; Significance: 5e-81; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 59 - 243
Target Start/End: Original strand, 6993218 - 6993402
Alignment:
| Q |
59 |
tcctaagtctcgattaaggcaaagttagggggcaaaaaa--ttacttttgcttgcaagtcaagaaaagagagttgctgccaaagttttgccccgaaattt |
156 |
Q |
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| T |
6993218 |
tcctaagtctggattaaggcaaagttacggggcaaaaaaaattacttttgcttgcaagtcaaaaaaagag--ttgctgccaaagttttgccccgaaattt |
6993315 |
T |
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| Q |
157 |
cttatcaaaaataatatttgctgcaaaaacatgagtttcatgtaggacggtccatgaaattgactctagaaattttgatattctttt |
243 |
Q |
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| T |
6993316 |
cttatcaaaaataatatttgctgcaaaaacatgagtttcatgtaggacggtccatgaaattgactctagaaattttgatattctttt |
6993402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 224 - 350
Target Start/End: Original strand, 6993412 - 6993538
Alignment:
| Q |
224 |
agaaattttgatattcttttctttctagatgtatagattctaattaagcatcctttggtaacattgaacatctcctctattttggttagagtatgcagtt |
323 |
Q |
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| T |
6993412 |
agaaattttgatattcttttctttctagatgtatagattctaattaagcatcctttggtaacattgaacatctcctctattttggttagagtatgcagtt |
6993511 |
T |
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| Q |
324 |
acctagttttgaccagtagcctatgct |
350 |
Q |
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| T |
6993512 |
acctagttttgaccagtagcctatgct |
6993538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 6993125 - 6993186
Alignment:
| Q |
1 |
attataagcaagacaaggtctttaaattttgatcaccattataagtaaaatcaattattcct |
62 |
Q |
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| T |
6993125 |
attataagcaagacaaggtctttaaattttcatcaccattataagtaaaatcaattattcct |
6993186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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