View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10150_low_1 (Length: 480)
Name: NF10150_low_1
Description: NF10150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10150_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 14 - 474
Target Start/End: Original strand, 2929117 - 2929573
Alignment:
| Q |
14 |
atcatgtagaagtttt-gtcgtcagtctttatatgaaatcaaaactttgtagcatatgacttttaaagtgaaaaaattagtgactacggactttgatttc |
112 |
Q |
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| T |
2929117 |
atcatgtagaagtttttgtcgtcagtctttatatgaaatcaaaactttgtagcatatgacttttaaagtgaaaaaattagtgactaaggactttgatttc |
2929216 |
T |
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| Q |
113 |
atatatgaattgaagacaatgccataaaattaataaactaaatatgggacttatttattagaatggtatatggagatatatactaaggactttagcgacc |
212 |
Q |
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| T |
2929217 |
atatatgaattgaagacaatgccataaaattaataaactaaatatgggac----ttattagaatggtatatggagatatatactaaggactttagcgacc |
2929312 |
T |
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| Q |
213 |
ttccgctcaagctagtagcaaatcttatacaaaacacaaatgcaatcatgttaaattttaagaaagaaagtatgtctag--ttcaaacatatttacaagg |
310 |
Q |
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| T |
2929313 |
ttccgctcaagctagtagcaaatcttatacaaaacacaaatgcaatcatgttaaattttaagaaagaaagtatgtctagaattcaaacatatttacaagg |
2929412 |
T |
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| Q |
311 |
agattaactcttgaactgattttcttaacaaattggagacacaatgcttctttctctggacgataatcttcttattcttcgtgagctcttaagcttctat |
410 |
Q |
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||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2929413 |
agattaactcttgtactgattttctt---aaattggagacacaatgcttctttctctggacgataatcttcttattcttcgtgagctcttaagcttctat |
2929509 |
T |
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| Q |
411 |
ttgatgtattaagatgcaatatccttaaattagttcgttagtctttctgtaactttcttctctc |
474 |
Q |
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| T |
2929510 |
ttgatgtattaagatgcaatatccctaaattagttcgttagtctttttgtaactttcttctctc |
2929573 |
T |
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