View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10150_low_10 (Length: 325)
Name: NF10150_low_10
Description: NF10150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10150_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 309
Target Start/End: Original strand, 20535074 - 20535369
Alignment:
| Q |
11 |
tgaaatgtatatcattaacaactacataatgaattttatataatcatattgtaagtaggttacaaattctataatccaaaaaatcgttccgatttaataa |
110 |
Q |
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|||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
20535074 |
tgaaatgtatatcattaacatctacata-tga-ttttatataatcatattgtaagtaggttaaaaattctataatccaaaaaatcgttccgatttaataa |
20535171 |
T |
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| Q |
111 |
tccaaacaaagtgtattttcgagcagnnnnnnngaaatagggatggaaaaagcaatagttaacannnnnnnctattcgatattagattaactcacacttg |
210 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
20535172 |
tccaaacaaagtgtattttcgagcagaaaaaaa-aaatagggatggaaaaagcaatagttaacatttttttctattcgatattagattaactaacacttg |
20535270 |
T |
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| Q |
211 |
agcccaacacaatgcatatagtatttcgttagaatacatgtataattaggtttacatttggtagcttatttatccacttaaaacatttaaagtctaaat |
309 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
20535271 |
agcccaacacaatgcatatagtatttggttagaatacatgtataattaggtttacatttgatagcttatttatccacttaaaacatttaaagtctaaat |
20535369 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 42
Target Start/End: Original strand, 21545527 - 21545558
Alignment:
| Q |
11 |
tgaaatgtatatcattaacaactacataatga |
42 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
21545527 |
tgaaatgtatatcattaacaactacataatga |
21545558 |
T |
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