View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10150_low_12 (Length: 292)
Name: NF10150_low_12
Description: NF10150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10150_low_12 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 10558527 - 10558236
Alignment:
| Q |
1 |
ctgaattcgagaaaaacatacattgcataatcaagatagttaaataacttaaattacataccattcctcccatggcatgtacaccgcgcctatgacatgt |
100 |
Q |
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| T |
10558527 |
ctgaattcgagaaaaacatacattgcataatcaagatagttaaataacttaaattacataccattcctcccatggcatgtacaccgcgcctatgacatgt |
10558428 |
T |
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| Q |
101 |
cctgatgagaaggtctgagtagctcttcatgaagtgttgactcatgccaacttggacccgatccggtagcaacctatccggatgagcatggaaggtctta |
200 |
Q |
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| T |
10558427 |
cctaatgagaaggtctgagtagctcttcatgaagtgttgactcatgccaacttggacccgatccggtagcaacctatccggatgagcatggaaggtctta |
10558328 |
T |
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| Q |
201 |
acataactgaaaatgtaatcccaacggccacagttgagaccaacagagtgatctctgagctcatacagaatttcatccatttgaaacactgc |
292 |
Q |
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| T |
10558327 |
acataactgaaaatgtaatcccaacggccacagttgagaccaacagagtgatctctgagctcatacagaatttcatccatttgaaacactgc |
10558236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 255 - 292
Target Start/End: Complemental strand, 10560372 - 10560335
Alignment:
| Q |
255 |
ctgagctcatacagaatttcatccatttgaaacactgc |
292 |
Q |
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| T |
10560372 |
ctgagctcatacaaaatttcatccatttgaaacactgc |
10560335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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