View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10150_low_16 (Length: 250)
Name: NF10150_low_16
Description: NF10150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10150_low_16 |
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| [»] scaffold0026 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 20535064 - 20534826
Alignment:
| Q |
1 |
ccccaagatttatattgtatcatcaagataaagggttttatccttttcaatcttgactcagtctccgaccttcttatgagcaccaacgttcacttcaagg |
100 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||| |
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| T |
20535064 |
ccccaagatttatattgtatcatcaagattaagggttttatccttttcaatcttgactccatccctgaccttcttatgagcaccaacgttcacttcaagg |
20534965 |
T |
|
| Q |
101 |
tcacggtttcatacaaggtagaaatcatcatctcctattatctcataacccggcgctcgacttagttcactataggctcatcctaccgacatatctttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
20534964 |
tcacggtttcatacaaggtagaaatcatcatctcctattacctcataacccggcgctcgacttagttcattataggctcatcctaccgacatatatttct |
20534865 |
T |
|
| Q |
201 |
tcccatttatttgcatcttcaagacattgttgtcttcat |
239 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||| |
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| T |
20534864 |
tccaatttatttgcatcttcaagacattgttgtcttcat |
20534826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 21943388 - 21943259
Alignment:
| Q |
19 |
atcatcaagataaagggttttatccttttcaatcttgactcagtctccgaccttcttatgagcaccaacgttcacttcaaggtcacggtttcatacaagg |
118 |
Q |
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||||||||| | |||| ||| || |||||||||||||||| ||||| ||||| || | |||| |||| ||| ||| ||||| ||||| | |||| |
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| T |
21943388 |
atcatcaagttcaaggttttcttctttttcaatcttgactccatctccaacctttttgttagcaacaactttctcttttgggtcaaggtttttaataagg |
21943289 |
T |
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| Q |
119 |
tagaaatcatcatctcctattatctcataa |
148 |
Q |
| |
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|| ||||||||||||||||||||||||||| |
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| T |
21943288 |
tacaaatcatcatctcctattatctcataa |
21943259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 26548100 - 26547966
Alignment:
| Q |
40 |
atccttttcaatcttgactcagtctccgaccttcttatgagcaccaacgttcacttcaaggtcacggtttcatacaaggtagaaatcatcatctcctatt |
139 |
Q |
| |
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||||||||| |||||||||| ||||||||||||||||||||| |||| ||| |||| ||||| ||||| |||||||| |||||||||||||||||| |
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| T |
26548100 |
atccttttctatcttgactctatctccgaccttcttatgagcaacaacattcttttcagggtcaaggttttcaacaaggtacaaatcatcatctcctatt |
26548001 |
T |
|
| Q |
140 |
atctcataacccggcgctcgacttagttcactata |
174 |
Q |
| |
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| ||||||||||| || | ||||||||||| |||| |
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| T |
26548000 |
acctcataacccgtcgtttgacttagttcattata |
26547966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 235
Target Start/End: Complemental strand, 14295157 - 14294952
Alignment:
| Q |
40 |
atccttttcaatcttgactcagtctccgaccttcttatgag--------caccaacgttcacttcaaggtcacggtttcatacaaggtagaaatcatcat |
131 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||| || |||| ||| ||||||||| | |||| ||||| || |||||||||| |
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| T |
14295157 |
atccttttcaatcttgactccatctccgagcttcttatgagaagcaagccaacaaccttctcttcaaggttaatgttttcaacaagctacaaatcatcat |
14295058 |
T |
|
| Q |
132 |
ctcctattatctcataacccggcgctcgacttagttcactataggc--tcatcctaccgacatatctttcttcccatttatttgcatcttcaagacattg |
229 |
Q |
| |
|
||| ||||| |||||||| || || |||||||| || ||| ||| |||| ||||||||||||||||| |||||||| ||||||| ||| |||| || |
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| T |
14295057 |
ctcatattacctcataacacgccgacagacttagtccattattggcaatcattctaccgacatatctttcatcccatttttttgcatattctcgacaatg |
14294958 |
T |
|
| Q |
230 |
ttgtct |
235 |
Q |
| |
|
|||||| |
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|
| T |
14294957 |
ttgtct |
14294952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 220
Target Start/End: Complemental strand, 4216412 - 4216235
Alignment:
| Q |
45 |
tttcaatcttgactcagtctccgaccttcttatgagcaccaacgttcacttcaaggtcacggtttcatacaaggtagaaatcatcatctcctattatctc |
144 |
Q |
| |
|
||||||||||||||| | ||| ||||||||||||| | ||| |||| ||| | ||||| ||||| ||| |||| ||||||||||||||||||| | | |
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| T |
4216412 |
tttcaatcttgactccatatccaaccttcttatgagtagcaaagttctctttagggtcaaggttttcgacatggtacaaatcatcatctcctattaacac |
4216313 |
T |
|
| Q |
145 |
ataacccggcgctcgacttagttcactataggc--tcatcctaccgacatatctttcttcccatttatttgcatcttc |
220 |
Q |
| |
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| ||| || |||||||||||| ||||||| |||| ||| ||||||||||||| |||||| ||||||||||| |
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| T |
4216312 |
aaaactttctgcccgacttagttcattataggcaatcattctatcgacatatctttcatcccatgactttgcatcttc |
4216235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 69806 - 69997
Alignment:
| Q |
19 |
atcatcaagataaagggttttatccttttcaatcttgactcagtctccgaccttcttatgagcaccaacgttcacttcaaggtcacggtttcatacaagg |
118 |
Q |
| |
|
||||||||||| ||| ||| |||||| ||||||||||||| ||||||||||| ||| || | |||| ||| ||||| | ||| ||||| |||||| |
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| T |
69806 |
atcatcaagattaagattttcatccttctcaatcttgactccatctccgacctttctatcagaaacaaccttctcttcaggatcaaggttttcaacaagg |
69905 |
T |
|
| Q |
119 |
tagaaatcatcatctcctattatctcataacccggcgctcgacttagttcactataggc--tcatcctaccgacatatctttcttcccattt |
208 |
Q |
| |
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|| | |||||||||||||| || || ||||| | || ||||||||||| || |||| |||||||| |||||||||||| |||||||| |
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| T |
69906 |
tacagatcatcatctcctactaccttataacttgtcggctgacttagttcattaaaggcaaccatcctactgacatatctttcatcccattt |
69997 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 220
Target Start/End: Original strand, 24578500 - 24578691
Alignment:
| Q |
31 |
aagggttttatccttttcaatcttgactcagtctccgaccttcttatgagcaccaacgttcacttcaaggtcacggtttcatacaaggtagaaatcatca |
130 |
Q |
| |
|
|||| ||| ||| |||||||||||||||| ||||| |||||||| | |||| |||| ||| ||||| | ||| ||||| |||| ||| || ||||| |
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| T |
24578500 |
aaggttttcatctttttcaatcttgactccatctccaaccttcttgtcagcatcaaccttctcttcaggatcaaggttttcaacaaagtacaatccatca |
24578599 |
T |
|
| Q |
131 |
tctcctattatctcataacccggcgctcgacttagttcactataggc--tcatcctaccgacatatctttcttcccatttatttgcatcttc |
220 |
Q |
| |
|
||| ||| || ||||||||| | | ||||||||||| ||||||| |||||||||||||||||| ||| |||| || ||||||||||| |
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|
| T |
24578600 |
tcttctactacctcataacctgatgtcagacttagttcattataggcaatcatcctaccgacatatcattcaccccaattttttgcatcttc |
24578691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 45294811 - 45294941
Alignment:
| Q |
19 |
atcatcaagataaagggttttatccttttcaatcttgactcagtctccgaccttcttatgagcaccaacgttcacttcaaggtcacggtttcatacaagg |
118 |
Q |
| |
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||||||||| | ||| ||| ||||| |||||||||||||| ||| | || ||||| |||| |||| ||| ||||| ||||| ||||| |||||| |
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| T |
45294811 |
atcatcaagttccaggctttcatcctattcaatcttgactccatcttcaacattcttgccagcatcaacattctcttcagggtcaaggttttcaacaagg |
45294910 |
T |
|
| Q |
119 |
tagaaatcatcatctcctattatctcataac |
149 |
Q |
| |
|
|| |||| |||||||||||||| |||||||| |
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|
| T |
45294911 |
tacaaattatcatctcctattacctcataac |
45294941 |
T |
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Back To:
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