View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10150_low_17 (Length: 245)
Name: NF10150_low_17
Description: NF10150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10150_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 229
Target Start/End: Complemental strand, 42516658 - 42516437
Alignment:
| Q |
8 |
aagcaaaggatggattttgacgccataggagagaattgagagtaagtaaggtttgtgtgatatttgtggagaaaaagaataaagcgatgcacaaatatat |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42516658 |
aagccaaggatggattttgacgccataggagagaattgagagtaagtaaggtttgtgtgatatttgtggagaaaaagaataaagcgatgcacaaatatat |
42516559 |
T |
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| Q |
108 |
cgattttttattgaagttttgaagaatgtgaaatattagggctggcacaacttattatatatatcctaacttttggttaaagtatatcatcaatatacat |
207 |
Q |
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||| |||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42516558 |
cgaattttgattgaagttttgaagaatgtgatatatttgggctggcacaacttattatatatatcctaacttttggttaaagtatatcatcaatatacat |
42516459 |
T |
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| Q |
208 |
aattatagggttaataaaaact |
229 |
Q |
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|||||||||||||||||||||| |
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| T |
42516458 |
aattatagggttaataaaaact |
42516437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 8 - 229
Target Start/End: Complemental strand, 42523310 - 42523087
Alignment:
| Q |
8 |
aagcaaaggatggattttgacgccataggagagaattgagagtaagtaaggtttgtgtgatatttgtggagaaaaagaataaagcgatgcacaaatatat |
107 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
42523310 |
aagccaaggatggattttgacgccataggagagaattgagagtaagtaaggtttgtgcgatatttgtggagaaaaagaataaagcgatgcacaaatatat |
42523211 |
T |
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| Q |
108 |
cgattttttattgaagttttgaagaatgtgaaatattagggctggcacaacttattatat--atatcctaacttttggttaaagtatatcatcaatatac |
205 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42523210 |
cgatttttgattgaagttttgaagaatgtgaaatattagggctggcacaacttattatatatatatcctaacttttggttaaagtatatcatcaatatac |
42523111 |
T |
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| Q |
206 |
ataattatagggttaataaaaact |
229 |
Q |
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|||||||||||||||||||||||| |
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| T |
42523110 |
ataattatagggttaataaaaact |
42523087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 42507137 - 42507037
Alignment:
| Q |
8 |
aagcaaaggatggattttgacgccataggagagaa--ttgagagtaagtaaggtttgtgtgatatttgtggagaaaaagaataaagcgatgcacaaatat |
105 |
Q |
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|||| |||||||||||||||||||||| ||||||| |||| |||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42507137 |
aagccaaggatggattttgacgccatacgagagaaaattgaaagtaagta-ggtttttgtgatatttgtggagaaaaagaataatgcgatgcacaaatat |
42507039 |
T |
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| Q |
106 |
at |
107 |
Q |
| |
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|| |
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|
| T |
42507038 |
at |
42507037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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