View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10150_low_3 (Length: 472)
Name: NF10150_low_3
Description: NF10150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10150_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 19 - 458
Target Start/End: Original strand, 4878786 - 4879221
Alignment:
| Q |
19 |
agaggacctagcagaatgcttgctactaatgataatcaagtaactccacaaacagagaattcaggtcaacaatcacctaattgtcagccaaatggtttgc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4878786 |
agaggacctagcagaatgcttgctactaatgataatcaagtaactccacaaacagagaattcaggtcaacaatcacctaattgtcagccaaatagtttgc |
4878885 |
T |
|
| Q |
119 |
aaggttcaagttcatgtcttgccagtcctcagttaaatcaaggaaggccttgtgaacctttaaacagagtatcatatccttactgcaagtgaacaatatg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4878886 |
aaggttcaagttcatgtcttgccagtcctcagttaaatcaaggaagaccttgcgaacctttaaacagag---catatccttactgcaagtgaacaatatg |
4878982 |
T |
|
| Q |
219 |
gtttactgtgactcaattatttgtcttccattaaatggtttccatatttctattttcaagttgaactatgtaaggcttcacannnnnnnactttggtttt |
318 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4878983 |
gtttattgtgactcaattatttgtcttccattaaatggtttccgtatttctattttcaagttgaactatgtaaggcttcaca-ttttttactttggtttt |
4879081 |
T |
|
| Q |
319 |
cgtaaaatatttatttctatgttaactatgaattgttatgttgaataattctatgataataggtgacttctgctagcaaatttattgtcaagtgtatgat |
418 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4879082 |
tgtaaaatatgtatttctatgttaactatgaattgttatgttgaataattctatgataataggtgacttctgctagcaaatttattgtcaagtgtatgat |
4879181 |
T |
|
| Q |
419 |
aaaaataaattgatactaatgattatttacaattgttttc |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4879182 |
aaaaataaattgatactaatgattatttacaattgttttc |
4879221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University