View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10150_low_4 (Length: 471)
Name: NF10150_low_4
Description: NF10150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10150_low_4 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 16 - 471
Target Start/End: Complemental strand, 46643580 - 46643134
Alignment:
| Q |
16 |
tatatgacatgaccaagtaaacactacctctgaatttgaaagaacaaaaaagaaaagaataaaatattccaaggccaagctcttatctcatcagagataa |
115 |
Q |
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| T |
46643580 |
tatatgacatgatcaagtaaacactccctctgaatttgaaagaacaaaaaagaaaagaataaaatgttccaag------ctcttatctcatcagagataa |
46643487 |
T |
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| Q |
116 |
tggtggtaagctgccnnnnnnnnnnnnnnnnntggacaagaaggtggtgttggcggtagagttacaaaagaacaaccaacaccagtacaatgaacaggat |
215 |
Q |
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| T |
46643486 |
tggtggtaagctgccggaggaggaggagg---tggacaagaaggtggtggtggcggtagagttacaaaagaacaaccaacaccagtacaatgaacaggat |
46643390 |
T |
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| Q |
216 |
gttcataaaaagcatcacacccatgactcgatctttggaaatgcatatgaggaatacaattctttgtatcatccttatcatccaacttaacacaaatctc |
315 |
Q |
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| T |
46643389 |
gttcataaaaagcatcacacccatgactcgatctttggaaatgcatatgaggaatacaattctttgtatcatccttatcatccaacttaacacaaatctc |
46643290 |
T |
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| Q |
316 |
tgattcaccactaaagtaattatacgaatacgtcaaattctccaaccttggcaatctacatatactctcaggaataacaccagaaaatttattatgtgcc |
415 |
Q |
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| T |
46643289 |
tgattcaccactcaggtaattatacgaatacgttaaattcttcaaccttggcaatctacatatactctcaggaataacaccagaaaatttattatgtgcc |
46643190 |
T |
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| Q |
416 |
acattcaactgctccaaacttttcattccactgatactttcaggcaattcaccaac |
471 |
Q |
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| T |
46643189 |
acattcaactgctccaaacttttcattccactgatactttcaggcaattcaccaac |
46643134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 46640749 - 46640709
Alignment:
| Q |
90 |
ccaagctcttatctcatcagagataatggtggtaagctgcc |
130 |
Q |
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| T |
46640749 |
ccaagctcttgtctcatcagagataatggtagtaagttgcc |
46640709 |
T |
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