View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10150_low_5 (Length: 464)
Name: NF10150_low_5
Description: NF10150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10150_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 306; Significance: 1e-172; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 447
Target Start/End: Original strand, 1694642 - 1695092
Alignment:
| Q |
1 |
tactccaataccattgctgatctgcaataatcagtaaaaatgtatattaataacatgggttaagtataaatcattcatccaatt---------------a |
85 |
Q |
| |
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| T |
1694642 |
tactccaataccattactgatctgcaataatcagtaaaaatgtatattaataacatgggttaagtataaatctttaatccaattgaattacatacaatta |
1694741 |
T |
|
| Q |
86 |
ttaactcacaagtcacaacaatactataggaatataaattaaatgaattaccagaacataaatgtcaaaggggtggagcagagcatatgttgtccagcaa |
185 |
Q |
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| T |
1694742 |
ttaactcacaaatcacaacaatactataggaatataaatt---------accagaacataaatgtcaaaggggtggagcagagcatatgttgtccagcaa |
1694832 |
T |
|
| Q |
186 |
agtccattgaggaagttggtaagagagagccagaatggcatgtatttcacactcttggttcttataaccgttgcctgttcatcatatattcatatgtaac |
285 |
Q |
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| T |
1694833 |
agtccattgaggaagttggtaagagagagccagaatggcatgtatttcacactcttggttcttataaccgttgcctgttca--------tcatatgtaac |
1694924 |
T |
|
| Q |
286 |
aagtttagagaaaatacagtataatcttcatatgatctg------aaattaatggaatagactttacttaccatgatagtaagaggagaagcatacatca |
379 |
Q |
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| T |
1694925 |
aagtttagagaaaatacagtataatcttcatatgatctgaatataaaattaatggaatagaagttacttaccatgatcgtaagaggagaagcatacatca |
1695024 |
T |
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| Q |
380 |
atatgttgaagatatcacaaataatcccaacaattaaagacctcttggtagtgccatgtaatgccaac |
447 |
Q |
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| T |
1695025 |
atatgttgaagatatcacaaataatcccaacaattaaagacctcttggtagtgccatgtaatgccaac |
1695092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 447
Target Start/End: Original strand, 1684221 - 1684669
Alignment:
| Q |
1 |
tactccaataccattgctgatctgcaataatcagtaaaaatgtatattaat-aacatgggttaagtataaatcattcatccaattattaactcacaagtc |
99 |
Q |
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|||||||||||||||||||||||||| || ||||| ||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1684221 |
tactccaataccattgctgatctgcagtagtcagtgaaagtgtatattaattaatatgggttaagtataaatcattcatccaattattaactcacaagtc |
1684320 |
T |
|
| Q |
100 |
acaacaatactataggaatataaattaaatgaattaccagaacataaatgtcaaaggggtggagcagagcatatgttgtccagcaaagtccattgaggaa |
199 |
Q |
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| T |
1684321 |
acaacaatactataggaatataaatt---------accagaacataaaggtcaaagggatggagcagagcatatgttgtccagcaaagtccattgaggaa |
1684411 |
T |
|
| Q |
200 |
gttggtaagagagagccagaatggcatgtatttcacactcttggttcttataaccgttgcctgttcatcatatattcatatgtaacaagtttagagaaa- |
298 |
Q |
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| T |
1684412 |
gttaaacacagagagccagaatggcatgtatttcacactcttagtcgttataacctttttctgttgatcata---tcatatgtaacaagtttagagaaaa |
1684508 |
T |
|
| Q |
299 |
-----------atacagtataatcttcatat---gatctgaaattaatggaatagactttacttaccatgatagtaagaggagaagcatacatcaatatg |
384 |
Q |
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| T |
1684509 |
tactttataagatacagtataa--ttcatatctgaatataaagttattggaatagaagttacttaccatgattgtaagaggagaaatatacatcaatatg |
1684606 |
T |
|
| Q |
385 |
ttgaagatatcacaaataatcccaacaattaaagacctcttggtagtgccatgtaatgccaac |
447 |
Q |
| |
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||||||| |||||||| ||| ||||||||||||||||| |||||||||||| ||| ||||| |
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| T |
1684607 |
ttgaagacatcacaaacaataccaacaattaaagacctgccggtagtgccatgaaataccaac |
1684669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 125 - 273
Target Start/End: Original strand, 1699864 - 1700012
Alignment:
| Q |
125 |
taaatgaattaccagaacataaatgtcaaaggggtggagcagagcatatgttgtccagcaaagtccattgaggaagttggtaagagagagccagaatggc |
224 |
Q |
| |
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||||| |||||||| |||||||| || || ||||||| |||||||||||||||||||| | ||||||||||||||||| ||||||||||| |||||| |
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| T |
1699864 |
taaattaattaccaagacataaatatccaatgggtggatgagagcatatgttgtccagcacaaaccattgaggaagttggttagagagagccaaaatggc |
1699963 |
T |
|
| Q |
225 |
atgtatttcacactcttggttcttataaccgttgcctgttcatcatata |
273 |
Q |
| |
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||||||||||||||||||||| |||||||| | |||||||||| ||||| |
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| T |
1699964 |
atgtatttcacactcttggtttttataaccttggcctgttcattatata |
1700012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 131 - 272
Target Start/End: Original strand, 1674181 - 1674322
Alignment:
| Q |
131 |
aattaccagaacataaatgtcaaaggggtggagcagagcatatgttgtccagcaaagtccattgaggaagttggtaagagagagccagaatggcatgtat |
230 |
Q |
| |
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||||||||| | ||||||||| ||||||| || ||||||||||||||||| || | |||||| || ||| | | |||||| || |||||||||||||| |
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| T |
1674181 |
aattaccaggagataaatgtcgaaggggttgatgagagcatatgttgtccaacacaatccattaagaaagatagccagagagggcaagaatggcatgtat |
1674280 |
T |
|
| Q |
231 |
ttcacactcttggttcttataaccgttgcctgttcatcatat |
272 |
Q |
| |
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||||||||||| ||| ||||||| || ||||||||| |||| |
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| T |
1674281 |
ttcacactctttgtttttataacattttcctgttcattatat |
1674322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 330 - 402
Target Start/End: Original strand, 1971015 - 1971087
Alignment:
| Q |
330 |
aatggaatagactttacttaccatgatagtaagaggagaagcatacatcaatatgttgaagatatcacaaata |
402 |
Q |
| |
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||||||||||| |||||||||| ||| ||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
1971015 |
aatggaatagaagttacttaccacgatggtaagaggagagacatacatcaatatggggaagatatcacaaata |
1971087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 447
Target Start/End: Original strand, 1700096 - 1700198
Alignment:
| Q |
345 |
acttaccatgatagtaagaggagaagcatacatcaatatgttgaagatatcacaaataatcccaacaattaaagacctcttggtagtgccatgtaatgcc |
444 |
Q |
| |
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|||||||||||| ||||||||||| |||||||||| | ||||||| |||||| | || ||||||||||| || || || |||||||||| | |||| |
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| T |
1700096 |
acttaccatgattgtaagaggagatgcatacatcatgacattgaagacatcacatagaacaccaacaattaacgatctttttttagtgccatgaagtgcc |
1700195 |
T |
|
| Q |
445 |
aac |
447 |
Q |
| |
|
||| |
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|
| T |
1700196 |
aac |
1700198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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