View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10150_low_6 (Length: 430)
Name: NF10150_low_6
Description: NF10150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10150_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 201 - 420
Target Start/End: Complemental strand, 481230 - 481011
Alignment:
| Q |
201 |
atcaggatggtgggtgctcttgccagtaaagagcatgatttccaccaagtacagcaaatatattaggacagcttgatcctagtttagataaatctcctct |
300 |
Q |
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| T |
481230 |
atcaggatggtgggtgctcttgccagtaaagagcatgatttccaccaagtacaacaaatatattaggacagcttgatcctagtttagataaatctcctct |
481131 |
T |
|
| Q |
301 |
tcatcacgctcctgcttagctccaattgacgcatgcagacatcttcgagctctctaaccaggtagatgaaccgtgcttgagcctcgtttatgacatctac |
400 |
Q |
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| T |
481130 |
tcatcacgctcctggttaactccaattgacgcatgcagacatcttcgagctctctaaccaggtaggtgaaccgtgcttgagcctcgtttatgacatctac |
481031 |
T |
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| Q |
401 |
ctcctagttagcctcctttg |
420 |
Q |
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|||||||||||||||||||| |
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| T |
481030 |
ctcctagttagcctcctttg |
481011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 19 - 154
Target Start/End: Complemental strand, 481365 - 481230
Alignment:
| Q |
19 |
taacatttacataaataacaatctctttgttatacctgaagcagtatcatctagccagacagattcctggtcttgtgaatgcatgaaacgttaaactcga |
118 |
Q |
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| T |
481365 |
taacatttacataaataacaatctctttgttatacctgaagcagtatcatctagccagacagattcctggtcttgtgaatgcatgaaacgttaaactcga |
481266 |
T |
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| Q |
119 |
tgcataagtgagtcaagacggtcgatacccatgcaa |
154 |
Q |
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| T |
481265 |
tgcataagtgagtcaggacggtcgatacccatgcaa |
481230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 3190841 - 3190879
Alignment:
| Q |
30 |
taaataacaatctctttgttatacctgaagcagtatcat |
68 |
Q |
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| T |
3190841 |
taaataacaatttctttgttatacctgaagcagtgtcat |
3190879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 3199659 - 3199697
Alignment:
| Q |
30 |
taaataacaatctctttgttatacctgaagcagtatcat |
68 |
Q |
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| T |
3199659 |
taaataacaatttctttgttatacctgaagcagtgtcat |
3199697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 3208497 - 3208535
Alignment:
| Q |
30 |
taaataacaatctctttgttatacctgaagcagtatcat |
68 |
Q |
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||||||||||| |||||||||||||||||||||| |||| |
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| T |
3208497 |
taaataacaatttctttgttatacctgaagcagtgtcat |
3208535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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