View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10150_low_9 (Length: 345)

Name: NF10150_low_9
Description: NF10150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10150_low_9
NF10150_low_9
[»] chr4 (4 HSPs)
chr4 (11-339)||(27808367-27808695)
chr4 (82-162)||(50200002-50200082)
chr4 (98-166)||(52071519-52071587)
chr4 (95-140)||(36246539-36246584)
[»] chr3 (4 HSPs)
chr3 (50-162)||(55166056-55166168)
chr3 (95-165)||(44674727-44674797)
chr3 (98-162)||(37705635-37705699)
chr3 (94-140)||(33695848-33695894)
[»] chr7 (1 HSPs)
chr7 (80-147)||(48892471-48892538)
[»] chr2 (1 HSPs)
chr2 (86-141)||(13344897-13344952)
[»] chr5 (2 HSPs)
chr5 (98-140)||(12552370-12552412)
chr5 (98-138)||(1318466-1318506)
[»] chr1 (2 HSPs)
chr1 (102-141)||(49848563-49848602)
chr1 (101-142)||(51044688-51044729)
[»] chr6 (1 HSPs)
chr6 (98-132)||(3911863-3911897)
[»] chr8 (2 HSPs)
chr8 (101-141)||(5948227-5948267)
chr8 (98-166)||(9622062-9622130)


Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 11 - 339
Target Start/End: Complemental strand, 27808695 - 27808367
Alignment:
Q  11 gattgagattgagaatgagaaacttcgtttaaaggcctatgagtagcagggtcaattcctctattcaaaagctttcttcttatatgagtgttccaataat 110  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27808695 gattgtgattgagaatgagaaacttcgtttaaaggcctatgagtagcagggtcaattcctctattcaaaagctttcttcttatatgagtgttccaataat 27808596  T
Q  111 tttttatctcattatctgttcttcctggtaatcttccagctatcaaagaccatctaaagaaaaaagagaaagaattaaaatttagttcatagtatcaaat 210  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27808595 tctttatctcattatctgttcttcctggtaatcttccagctatcaaagaccatctaaagaaaaaagagaaagaattaaaatttagttcatagtatcaaat 27808496  T
Q  211 gctatcaagccctagacagatagacaccagacacaacacggacatagtcacccaccagtagaaagaatttgaaaaatgaattaattgaattgtgttagga 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27808495 gctatcaagccctagacagatagacaccagacacaacacggacatagtcacccaccagtagaaagaatttgaaaaatgaattaattgaattgtgttagaa 27808396  T
Q  311 cgccgccttctatcagaagtgtctctgct 339  Q
    |||||||||||||||||||||||| ||||    
T  27808395 cgccgccttctatcagaagtgtctatgct 27808367  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 82 - 162
Target Start/End: Original strand, 50200002 - 50200082
Alignment:
Q  82 ctttcttcttatatgagtgttccaataattttttatctcattatctgttcttcctggtaatcttccagctatcaaagacca 162  Q
    |||||| |||| ||||| |||||||||||||||||||||||||||||| | |||||||||   ||||||||| | ||||||    
T  50200002 ctttctccttaaatgagagttccaataattttttatctcattatctgtacgtcctggtaaatgtccagctattacagacca 50200082  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 166
Target Start/End: Original strand, 52071519 - 52071587
Alignment:
Q  98 gtgttccaataattttttatctcattatctgttcttcctggtaatcttccagctatcaaagaccatcta 166  Q
    |||||||||||||| || || ||||| |||||||  ||||||| |||||||||||| | ||||||||||    
T  52071519 gtgttccaataattcttgatttcattgtctgttcgccctggtagtcttccagctattagagaccatcta 52071587  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 36246584 - 36246539
Alignment:
Q  95 tgagtgttccaataattttttatctcattatctgttcttcctggta 140  Q
    ||||||||||||||||| || || ||||| ||||||||||||||||    
T  36246584 tgagtgttccaataattcttgatttcattgtctgttcttcctggta 36246539  T

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Target: chr3 (Bit Score: 57; Significance: 9e-24; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 50 - 162
Target Start/End: Original strand, 55166056 - 55166168
Alignment:
Q  50 tgagtagcagggtcaattcctctattcaaaagctttcttcttatatgagtgttccaataattttttatctcattatctgttcttcctggtaatcttccag 149  Q
    ||||| || ||||||||||||||  ||||||||||  |||||| ||| || ||||||||||||||||||||||||||||||||||| |  |||||||| |    
T  55166056 tgagttgctgggtcaattcctctgctcaaaagcttctttcttaaatgtgtattccaataattttttatctcattatctgttcttccggccaatcttccgg 55166155  T
Q  150 ctatcaaagacca 162  Q
    |||||| ||||||    
T  55166156 ctatcatagacca 55166168  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 165
Target Start/End: Complemental strand, 44674797 - 44674727
Alignment:
Q  95 tgagtgttccaataattttttatctcattatctgttcttcctggtaatcttccagctatcaaagaccatct 165  Q
    ||||||||||| ||||| || |||||||||||||||||||||||||||||  ||||||| || ||||||||    
T  44674797 tgagtgttccagtaattcttgatctcattatctgttcttcctggtaatctagcagctattaaggaccatct 44674727  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 37705699 - 37705635
Alignment:
Q  98 gtgttccaataattttttatctcattatctgttcttcctggtaatcttccagctatcaaagacca 162  Q
    ||||||||||||||||| ||||||||||| ||||||||||| | ||| ||||||||||| |||||    
T  37705699 gtgttccaataatttttaatctcattatcggttcttcctggaattctcccagctatcaatgacca 37705635  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 33695894 - 33695848
Alignment:
Q  94 atgagtgttccaataattttttatctcattatctgttcttcctggta 140  Q
    ||||||||||||  |||| ||||||||||||||||||||||| ||||    
T  33695894 atgagtgttccagaaattctttatctcattatctgttcttccaggta 33695848  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 147
Target Start/End: Original strand, 48892471 - 48892538
Alignment:
Q  80 agctttcttcttatatgagtgttccaataattttttatctcattatctgttcttcctggtaatcttcc 147  Q
    |||||| | |||| ||| |||||||| ||||| ||||||||||||||||| | |||||||||||||||    
T  48892471 agctttttacttagatgtgtgttccagtaattctttatctcattatctgtacgtcctggtaatcttcc 48892538  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 141
Target Start/End: Complemental strand, 13344952 - 13344897
Alignment:
Q  86 cttcttatatgagtgttccaataattttttatctcattatctgttcttcctggtaa 141  Q
    ||||||| ||||| ||||||||| || ||||||||||||||||||| |||||||||    
T  13344952 cttcttaaatgagagttccaatagttctttatctcattatctgttcgtcctggtaa 13344897  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 12552412 - 12552370
Alignment:
Q  98 gtgttccaataattttttatctcattatctgttcttcctggta 140  Q
    ||||||||||||||||||||||| |||||||||| ||||||||    
T  12552412 gtgttccaataattttttatctcgttatctgttcgtcctggta 12552370  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 1318466 - 1318506
Alignment:
Q  98 gtgttccaataattttttatctcattatctgttcttcctgg 138  Q
    ||||||||| |||| ||||||||||||||||| ||||||||    
T  1318466 gtgttccaaaaattctttatctcattatctgtccttcctgg 1318506  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 141
Target Start/End: Original strand, 49848563 - 49848602
Alignment:
Q  102 tccaataattttttatctcattatctgttcttcctggtaa 141  Q
    ||||||| || |||||||||||||||||||||||||||||    
T  49848563 tccaatagttctttatctcattatctgttcttcctggtaa 49848602  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 142
Target Start/End: Complemental strand, 51044729 - 51044688
Alignment:
Q  101 ttccaataattttttatctcattatctgttcttcctggtaat 142  Q
    |||||| | ||||||||||||||||||||||| |||||||||    
T  51044729 ttccaaaagttttttatctcattatctgttctccctggtaat 51044688  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 132
Target Start/End: Complemental strand, 3911897 - 3911863
Alignment:
Q  98 gtgttccaataattttttatctcattatctgttct 132  Q
    |||||||||||||| ||||||||||||||||||||    
T  3911897 gtgttccaataattctttatctcattatctgttct 3911863  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 5948227 - 5948267
Alignment:
Q  101 ttccaataattttttatctcattatctgttcttcctggtaa 141  Q
    |||||| | |||||||||||||||||||||||||| |||||    
T  5948227 ttccaaaagttttttatctcattatctgttcttccaggtaa 5948267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 166
Target Start/End: Complemental strand, 9622130 - 9622062
Alignment:
Q  98 gtgttccaataattttttatctcattatctgttcttcctggtaatcttccagctatcaaagaccatcta 166  Q
    |||||||| || || ||||| ||||| ||||||| ||||||||||||||| ||||| |  |||||||||    
T  9622130 gtgttccagtagttctttatttcattgtctgttcgtcctggtaatcttccggctataagtgaccatcta 9622062  T

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