View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151A_high_11 (Length: 418)
Name: NF10151A_high_11
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 103 - 410
Target Start/End: Complemental strand, 39341338 - 39341033
Alignment:
| Q |
103 |
ttatattaaatgaaatgtagtttattgatccaaagatgaaaaacaaacgtgtatatcagtatatgatacaaaatatcttgtgcatatatcagacaaaatc |
202 |
Q |
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| T |
39341338 |
ttatattaaatgaaatgtagtttattgatccaaagatgaaaaacaaacttgtatatcagtatatgatacaaaatatcttgtgcatat--cagacaaaata |
39341241 |
T |
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| Q |
203 |
tttcttcccacaaccacacatgagttgctcagctcaagagcttgccaaatgcgttaatgctaggttgacctgcatcttaaacctctgcagtcaattgtat |
302 |
Q |
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| T |
39341240 |
tttcttcccacaactacacatgagttgctcagctcaagagcttgccaaatgcgttaatgctagattgacctgcatcttaaacctctgcagtcaattgtat |
39341141 |
T |
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| Q |
303 |
gattaatctaacggttgagatcaataccatcaagcattgaattagtaccaacctgatttgagccgatgctatagttagtaggtagctagcttattttgaa |
402 |
Q |
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| T |
39341140 |
gattaatctaacggttgagatcaataccatcaagcattgaattagtaccaacctgatttgagccgatgctatagttagtaggtagctagcttattttgaa |
39341041 |
T |
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| Q |
403 |
tctatgat |
410 |
Q |
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| T |
39341040 |
tctatgat |
39341033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 7890399 - 7890457
Alignment:
| Q |
60 |
atgcacaaactaattttaattattggatcaatatattccaccattatattaaatgaaat |
118 |
Q |
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| T |
7890399 |
atgcacaaagtagttttcactattggatcaataaatttcaccattaaattaaatgaaat |
7890457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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