View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10151A_high_3 (Length: 492)
Name: NF10151A_high_3
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 20 - 452
Target Start/End: Original strand, 7820665 - 7821109
Alignment:
| Q |
20 |
catcaaagggtaattcaatccgtctttatttttaggtttgtttttgcatttgattcttgtaaatataatcaactttggttttagttactcttaacttttt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7820665 |
catcaaagggtaattcaatccgtctttatttttaggtttgtttttgcatttgattcttgtaaatataatcaactttggttttagttactctaaacttttt |
7820764 |
T |
|
| Q |
120 |
tatcatgtggctaatgaagaacaatctaatggatgacacacatctatgagttattactattagaaaaacaataatgg-----atgcactcattggaatac |
214 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||| || | ||||| |||||||||| | |
|
|
| T |
7820765 |
tatcatgtggttaatgaagaaccatctaatggatgacaca--tctttgagttattactattagaaaaacaaaaacgtgcagaatgcattcattggaatgc |
7820862 |
T |
|
| Q |
215 |
taggt---------atttggctttgtgttcgccacattagtttgtcaaaaatcaacaaagatcgatttatgttgatgaagtataaaataaaaaattatcc |
305 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7820863 |
taggtcgtgttgtcatttggctttgtgttcgccacatcagtttgtcaaaaatcaacaaagatcgatttatgttgatgaagtataaaataaaaaattatcc |
7820962 |
T |
|
| Q |
306 |
tgattaaaaccaaagtttgctatatttagaaggattaaatgaataatgaagccttatttttattactctaatttataataagcgacctatataacattta |
405 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7820963 |
tgattaaaatcaaagtttgctatatttagaaggactgaatgaataatcaagccttatttttattactctaatttataataagcgacctatataacattta |
7821062 |
T |
|
| Q |
406 |
tccnnnnnnnnnatatgtaaaatagacagaaatttttcatgattgtc |
452 |
Q |
| |
|
||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
7821063 |
tcctttttttttttatgtaaaattgacagaaatttttcatgattgtc |
7821109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 269 - 408
Target Start/End: Original strand, 7810960 - 7811097
Alignment:
| Q |
269 |
gatttatgttgatgaagtataaaataaaaaattatcctgattaaaaccaaagtttgctatatttagaaggattaaatgaataatgaagccttatttttat |
368 |
Q |
| |
|
|||| |||||||||||||| || | |||||||||||| || ||||| |||||||||| ||||| ||||| |||||||||||| || |||||||||||| |
|
|
| T |
7810960 |
gattcatgttgatgaagta-aacacaaaaaattatcccgactaaaattaaagtttgct-tatttgcaaggactaaatgaataatcaaaccttatttttat |
7811057 |
T |
|
| Q |
369 |
tactctaatttataataagcgacctatataacatttatcc |
408 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
7811058 |
tactctaatttataatatgcgacctatatgacatttatcc |
7811097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 20 - 157
Target Start/End: Original strand, 7810689 - 7810828
Alignment:
| Q |
20 |
catcaaagggtaattcaatccgtcttta-tttttaggtttgtttttgcatttgattcttgtaaatataatcaactttggttttagttactcttaac-ttt |
117 |
Q |
| |
|
||||||| |||| | |||||| |||||| |||||||||||||| |||||||||||| || ||||||||| |||||| ||||||||| ||| ||| ||| |
|
|
| T |
7810689 |
catcaaatggtattccaatccttctttaatttttaggtttgttcatgcatttgattcctgcaaatataatgaactttagttttagttcctcaaaactttt |
7810788 |
T |
|
| Q |
118 |
tttatcatgtggctaatgaagaacaatctaatggatgaca |
157 |
Q |
| |
|
|||||||||||||| ||||||| | ||||||||||||||| |
|
|
| T |
7810789 |
tttatcatgtggctgatgaagatccatctaatggatgaca |
7810828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 456 - 489
Target Start/End: Original strand, 7811161 - 7811194
Alignment:
| Q |
456 |
gaaggtaaggaagttaagttggaaatgaaggtag |
489 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
7811161 |
gaaggtaaggaagttaagttggaaatgaaggtag |
7811194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 456 - 489
Target Start/End: Original strand, 7811357 - 7811390
Alignment:
| Q |
456 |
gaaggtaaggaagttaagttggaaatgaaggtag |
489 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
7811357 |
gaaggtaaggaagttaagttggaaatgaaggtag |
7811390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 456 - 489
Target Start/End: Original strand, 7821129 - 7821162
Alignment:
| Q |
456 |
gaaggtaaggaagttaagttggaaatgaaggtag |
489 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
7821129 |
gaaggtaaggaagttaagttggaaatgaaggtag |
7821162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University