View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151A_high_34 (Length: 266)
Name: NF10151A_high_34
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_high_34 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 25 - 228
Target Start/End: Complemental strand, 36904104 - 36903902
Alignment:
| Q |
25 |
ctaaatgagtatacgatcttctattatttccattgccttgtttgtttttatatatgatgttttatcgtttgaaattttgtagatattcttttatcatggg |
124 |
Q |
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| T |
36904104 |
ctaaatgagtatacgatcttctattatttccattgccttgtttgtttttatatatgatgttttatcgtttgaaattttgtagatattcttttatcatggg |
36904005 |
T |
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| Q |
125 |
tttgtataaactgatttcatcttgcttttacaaagtttctgatggcacatttgtttacttggtatgtatgtgatgtgatgccaaatactctataactcat |
224 |
Q |
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| T |
36904004 |
tttgtataaact-atttcatcttgctttcacaaagtttctgatggcccatttgtttacttggtatgtatgtgatgtgatgccaaatactctataactcat |
36903906 |
T |
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| Q |
225 |
gcaa |
228 |
Q |
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|||| |
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| T |
36903905 |
gcaa |
36903902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 202 - 266
Target Start/End: Complemental strand, 36908459 - 36908395
Alignment:
| Q |
202 |
atgccaaatactctataactcatgcaagacaaagattgtgcaaaatgaatggttcaatttcaatt |
266 |
Q |
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| T |
36908459 |
atgccaaatactctataactcatgcaagacagagattgtgcaaaatgaatggttcaatttcaatt |
36908395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 93 - 148
Target Start/End: Complemental strand, 36908517 - 36908462
Alignment:
| Q |
93 |
ttgaaattttgtagatattcttttatcatgggtttgtataaactgatttcatcttg |
148 |
Q |
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| T |
36908517 |
ttgaaattttgtagatattcttttatcatgggtttgtataaactgatttcctcttg |
36908462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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