View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10151A_high_36 (Length: 260)

Name: NF10151A_high_36
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10151A_high_36
NF10151A_high_36
[»] chr8 (7 HSPs)
chr8 (38-247)||(14327123-14327332)
chr8 (110-187)||(4479734-4479812)
chr8 (126-186)||(1230668-1230729)
chr8 (140-187)||(3672637-3672685)
chr8 (114-186)||(30429218-30429290)
chr8 (137-182)||(26885656-26885702)
chr8 (137-186)||(26886060-26886110)
[»] chr6 (6 HSPs)
chr6 (108-187)||(12256469-12256548)
chr6 (110-186)||(12735234-12735311)
chr6 (140-186)||(31895282-31895328)
chr6 (110-185)||(16890439-16890515)
chr6 (126-184)||(1989050-1989108)
chr6 (137-182)||(7288956-7289001)
[»] chr3 (5 HSPs)
chr3 (108-185)||(15873030-15873107)
chr3 (131-185)||(4668678-4668733)
chr3 (140-185)||(28244125-28244171)
chr3 (112-181)||(29791774-29791844)
chr3 (112-168)||(19126670-19126727)
[»] chr4 (8 HSPs)
chr4 (126-186)||(39606574-39606634)
chr4 (137-186)||(40172064-40172113)
chr4 (121-186)||(21465604-21465670)
chr4 (137-186)||(43722758-43722808)
chr4 (126-187)||(51002279-51002341)
chr4 (126-181)||(7739217-7739273)
chr4 (134-186)||(10573648-10573700)
chr4 (134-186)||(30893444-30893496)
[»] chr7 (8 HSPs)
chr7 (134-185)||(23198764-23198816)
chr7 (140-186)||(27993050-27993097)
chr7 (140-186)||(47677598-47677645)
chr7 (137-186)||(22267574-22267624)
chr7 (137-186)||(36755008-36755057)
chr7 (137-186)||(36760805-36760854)
chr7 (148-187)||(1399154-1399194)
chr7 (140-187)||(10025986-10026034)
[»] chr5 (8 HSPs)
chr5 (119-185)||(14880406-14880473)
chr5 (137-187)||(9584591-9584642)
chr5 (108-182)||(133554-133628)
chr5 (131-184)||(16193102-16193156)
chr5 (137-185)||(3156528-3156577)
chr5 (137-193)||(5739115-5739172)
chr5 (140-187)||(8543568-8543616)
chr5 (135-182)||(41344573-41344621)
[»] chr2 (8 HSPs)
chr2 (137-186)||(17413350-17413400)
chr2 (137-186)||(17736786-17736836)
chr2 (141-185)||(22558971-22559016)
chr2 (126-186)||(42475117-42475178)
chr2 (137-184)||(4226989-4227037)
chr2 (143-186)||(17779016-17779060)
chr2 (141-185)||(21929465-21929509)
chr2 (122-181)||(32957546-32957606)
[»] chr1 (8 HSPs)
chr1 (122-181)||(20711208-20711268)
chr1 (137-184)||(51046137-51046185)
chr1 (137-186)||(43840343-43840393)
chr1 (126-182)||(21041341-21041398)
chr1 (137-181)||(45701326-45701371)
chr1 (126-178)||(52262173-52262226)
chr1 (119-182)||(3573325-3573388)
chr1 (147-186)||(6423790-6423830)
[»] scaffold0012 (1 HSPs)
scaffold0012 (137-186)||(118812-118862)


Alignment Details
Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 38 - 247
Target Start/End: Complemental strand, 14327332 - 14327123
Alignment:
Q  38 tgttagcatgaaaaatcatttcttttcacagagttttctcccattgcctgctgtgttttcatannnnnnnggtagtggccaggatttaaacctcaaactt 137  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||       |||||||| ||| |||| ||||||||||||    
T  14327332 tgttagcatgaaaaatcatttcttttcgtagagttttctcccattgcctgctgtgttttcatattttttaggtagtggtcagaatttgaacctcaaactt 14327233  T
Q  138 tacatatttaatgcattgttcaaccaactgagttaaactcacgaggacagctgtgctttcatatgatttgtagcgaaaaaattagtgtacgaaatatcgt 237  Q
    ||||||||| ||| ||||| |||||||||||  |||  |||| | ||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  14327232 tacatatttgatgtattgtccaaccaactgaactaagttcacaaagacagttgtgctttcatatgatttgtagcgaaaaaatcagtgtacaaaatatcgt 14327133  T
Q  238 caattaatat 247  Q
    ||||||||||    
T  14327132 caattaatat 14327123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 187
Target Start/End: Complemental strand, 4479812 - 4479734
Alignment:
Q  110 tagtggccaggatttaaacctcaaactttacatatttaatgcattgtt-caaccaactgagttaaactcacgaggacag 187  Q
    ||||||||  ||||| |||| ||||||||| |||||| |||||||||| |||||| ||||||||||||||||| |||||    
T  4479812 tagtggccgagatttgaaccccaaactttatatattttatgcattgttccaaccagctgagttaaactcacgaagacag 4479734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 186
Target Start/End: Original strand, 1230668 - 1230729
Alignment:
Q  126 aacctcaaactttacatatttaatgcattgttca-accaactgagttaaactcacgaggaca 186  Q
    |||||||||| |||||||| | |||||||||||  |||||||||||||||||| ||||||||    
T  1230668 aacctcaaaccttacatatattatgcattgttcctaccaactgagttaaactcgcgaggaca 1230729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 187
Target Start/End: Original strand, 3672637 - 3672685
Alignment:
Q  140 catatttaatgcattgt-tcaaccaactgagttaaactcacgaggacag 187  Q
    ||||||| ||||||||| ||||||||||||||||||||||| |||||||    
T  3672637 catattttatgcattgtctcaaccaactgagttaaactcacaaggacag 3672685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 186
Target Start/End: Complemental strand, 30429290 - 30429218
Alignment:
Q  114 ggccaggatttaaacctcaaactttacatatttaatgcattgttcaaccaactgagttaaactcacgaggaca 186  Q
    ||||||| |||||||| | ||| || ||||||| ||  |||||||||||||||||||||| || |||||||||    
T  30429290 ggccagggtttaaaccccgaaccttgcatattttatatattgttcaaccaactgagttaagcttacgaggaca 30429218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 26885656 - 26885702
Alignment:
Q  137 ttacatatttaatgcattgttca-accaactgagttaaactcacgag 182  Q
    |||||||||| |||||||||||| |||||||||| ||||||||||||    
T  26885656 ttacatattttatgcattgttcataccaactgagctaaactcacgag 26885702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 26886060 - 26886110
Alignment:
Q  137 ttacatatttaatgcattgttca-accaactgagttaaactcacgaggaca 186  Q
    |||||||||| ||||||||| || ||||||| |||||||||||||||||||    
T  26886060 ttacatattttatgcattgtccataccaactaagttaaactcacgaggaca 26886110  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 187
Target Start/End: Complemental strand, 12256548 - 12256469
Alignment:
Q  108 ggtagtggccaggatttaaacctcaaactttacatatttaatgcattgttcaaccaactgagttaaactcacgaggacag 187  Q
    |||||||| |||| |||||||| || ||||||||||||| ||||||| |||||||||||||| ||| |||||||||||||    
T  12256548 ggtagtggtcagggtttaaaccccagactttacatattttatgcattattcaaccaactgagctaagctcacgaggacag 12256469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 186
Target Start/End: Original strand, 12735234 - 12735311
Alignment:
Q  110 tagtggccaggatttaaacctcaaactttacatatttaatgcattgttc-aaccaactgagttaaactcacgaggaca 186  Q
    ||||||||||| ||| |||| ||||| || ||||||| ||||||||| | ||||||||||||||| ||||||||||||    
T  12735234 tagtggccagggtttgaaccccaaaccttgcatattttatgcattgtcccaaccaactgagttaagctcacgaggaca 12735311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 31895328 - 31895282
Alignment:
Q  140 catatttaatgcattgttcaaccaactgagttaaactcacgaggaca 186  Q
    ||||||| ||||||||| |||||||||||||||| ||||||||||||    
T  31895328 catatttgatgcattgtccaaccaactgagttaagctcacgaggaca 31895282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 185
Target Start/End: Original strand, 16890439 - 16890515
Alignment:
Q  110 tagtggccaggatttaaacctcaaactttacatatttaatgcattgttca-accaactgagttaaactcacgaggac 185  Q
    ||||||||| ||||| ||||| | || |||||||||| ||||||||| || ||||||| |||||| |||||||||||    
T  16890439 tagtggccatgatttgaaccttagaccttacatattttatgcattgtccataccaactaagttaagctcacgaggac 16890515  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 1989050 - 1989108
Alignment:
Q  126 aacctcaaactttacatatttaatgcattgttcaaccaactgagttaaactcacgagga 184  Q
    |||||||||| |||||||| | |||||||||   |||||||||||||| ||||||||||    
T  1989050 aacctcaaaccttacatatattatgcattgtcataccaactgagttaagctcacgagga 1989108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 7289001 - 7288956
Alignment:
Q  137 ttacatatttaatgcattgttcaaccaactgagttaaactcacgag 182  Q
    |||||||||| ||| |||||||||||||||||| ||| ||||||||    
T  7289001 ttacatatttgatgtattgttcaaccaactgagctaagctcacgag 7288956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 108 - 185
Target Start/End: Original strand, 15873030 - 15873107
Alignment:
Q  108 ggtagtggccaggatttaaacctcaaactttacatatttaatgcattgttcaaccaactgagttaaactcacgaggac 185  Q
    |||||||| |||||||| ||||||| |||||| |||||| ||||| |||||||||||||||| ||| |||||||||||    
T  15873030 ggtagtggtcaggatttgaacctcagactttaaatatttgatgcactgttcaaccaactgagctaagctcacgaggac 15873107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 185
Target Start/End: Complemental strand, 4668733 - 4668678
Alignment:
Q  131 caaactttacatatttaatgcattgttc-aaccaactgagttaaactcacgaggac 185  Q
    |||||||||||||| | ||||||||||| ||| ||| |||||||||||||||||||    
T  4668733 caaactttacatatattatgcattgttcaaactaaccgagttaaactcacgaggac 4668678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 28244125 - 28244171
Alignment:
Q  140 catatttaatgcattgttca-accaactgagttaaactcacgaggac 185  Q
    ||||||| |||||||||||| |||||||||||||| |||||||||||    
T  28244125 catattttatgcattgttcataccaactgagttaagctcacgaggac 28244171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 181
Target Start/End: Complemental strand, 29791844 - 29791774
Alignment:
Q  112 gtggccaggatttaaacctcaaactttacatatttaatgcattgtt-caaccaactgagttaaactcacga 181  Q
    ||||||| ||||| |||||||||| |||||||| | ||| |||||| | | ||||||||||||||||||||    
T  29791844 gtggccaagatttgaacctcaaaccttacatatattatgtattgtttctatcaactgagttaaactcacga 29791774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 19126670 - 19126727
Alignment:
Q  112 gtggccaggatttaaacctcaaactttacatatttaatgcattgttca-accaactga 168  Q
    ||||||||||||| |||| ||||| |||||||||| ||||||||| || |||||||||    
T  19126670 gtggccaggatttgaaccccaaaccttacatattttatgcattgtccataccaactga 19126727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 186
Target Start/End: Original strand, 39606574 - 39606634
Alignment:
Q  126 aacctcaaactttacatatttaatgcattgttcaaccaactgagttaaactcacgaggaca 186  Q
    |||||| |||||||||||||| || ||||||||||||||||||| ||| ||||||||||||    
T  39606574 aacctcgaactttacatattttatacattgttcaaccaactgagctaagctcacgaggaca 39606634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 40172113 - 40172064
Alignment:
Q  137 ttacatatttaatgcattgttcaaccaactgagttaaactcacgaggaca 186  Q
    |||||||||| ||||||| | |||||||||||||||| ||||||||||||    
T  40172113 ttacatatttgatgcattttccaaccaactgagttaagctcacgaggaca 40172064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 186
Target Start/End: Complemental strand, 21465670 - 21465604
Alignment:
Q  121 atttaaacctcaaactttacatatttaatgcattgttca-accaactgagttaaactcacgaggaca 186  Q
    ||||||| ||||||| |||||||| | ||||||||| |  || ||||||||||||||||||||||||    
T  21465670 atttaaaactcaaaccttacatatattatgcattgtccttactaactgagttaaactcacgaggaca 21465604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 43722808 - 43722758
Alignment:
Q  137 ttacatatttaatgcattgttca-accaactgagttaaactcacgaggaca 186  Q
    |||||||| | ||||||||| || |||||||||||||||||||||||||||    
T  43722808 ttacatatattatgcattgtccataccaactgagttaaactcacgaggaca 43722758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 187
Target Start/End: Complemental strand, 51002341 - 51002279
Alignment:
Q  126 aacctcaaactttacatatttaatgcattgttca-accaactgagttaaactcacgaggacag 187  Q
    |||||||||| || ||||||| |||||||||  | |||||||||||||| |||||||||||||    
T  51002341 aacctcaaaccttgcatattttatgcattgtctataccaactgagttaagctcacgaggacag 51002279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 181
Target Start/End: Original strand, 7739217 - 7739273
Alignment:
Q  126 aacctcaaactttacatatttaatgcattgt-tcaaccaactgagttaaactcacga 181  Q
    ||||||| || |||||||||| ||||||||| |||||||||||| |||| |||||||    
T  7739217 aacctcagaccttacatatttgatgcattgtctcaaccaactgaattaatctcacga 7739273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 186
Target Start/End: Original strand, 10573648 - 10573700
Alignment:
Q  134 actttacatatttaatgcattgttcaaccaactgagttaaactcacgaggaca 186  Q
    |||||| |||||  ||||||||| |||||||||||||||| ||||||| ||||    
T  10573648 actttatatattagatgcattgtccaaccaactgagttaagctcacgatgaca 10573700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 186
Target Start/End: Original strand, 30893444 - 30893496
Alignment:
Q  134 actttacatatttaatgcattgttcaaccaactgagttaaactcacgaggaca 186  Q
    ||||| ||||| | ||||||||||| |||||||||||||  ||||||||||||    
T  30893444 actttgcatatatcatgcattgttctaccaactgagttatgctcacgaggaca 30893496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 185
Target Start/End: Original strand, 23198764 - 23198816
Alignment:
Q  134 actttacatatttaatgcattgttca-accaactgagttaaactcacgaggac 185  Q
    ||||| ||||||| |||||||||||| ||||||||||||||||||||||||||    
T  23198764 actttgcatattttatgcattgttcataccaactgagttaaactcacgaggac 23198816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 27993050 - 27993097
Alignment:
Q  140 catatttaatgcattgttca-accaactgagttaaactcacgaggaca 186  Q
    ||||||| |||||||||||| |||||||||||||| ||||||||||||    
T  27993050 catattttatgcattgttcataccaactgagttaagctcacgaggaca 27993097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 47677598 - 47677645
Alignment:
Q  140 catatttaatgcattgttc-aaccaactgagttaaactcacgaggaca 186  Q
    ||||||| ||||||||||| ||||||||||| ||||||||||||||||    
T  47677598 catattttatgcattgttctaaccaactgagctaaactcacgaggaca 47677645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 22267624 - 22267574
Alignment:
Q  137 ttacatatttaatgcattgt-tcaaccaactgagttaaactcacgaggaca 186  Q
    |||||||| | ||||||||| || |||||||||||||||||||||||||||    
T  22267624 ttacatatattatgcattgtctctaccaactgagttaaactcacgaggaca 22267574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 36755057 - 36755008
Alignment:
Q  137 ttacatatttaatgcattgttcaaccaactgagttaaactcacgaggaca 186  Q
    |||||||| | ||||||||| | |||||||||||||| ||||||||||||    
T  36755057 ttacatatattatgcattgtcctaccaactgagttaagctcacgaggaca 36755008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 36760854 - 36760805
Alignment:
Q  137 ttacatatttaatgcattgttcaaccaactgagttaaactcacgaggaca 186  Q
    |||||||| | ||||||||| | |||||||||||||| ||||||||||||    
T  36760854 ttacatatattatgcattgtcctaccaactgagttaagctcacgaggaca 36760805  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 187
Target Start/End: Complemental strand, 1399194 - 1399154
Alignment:
Q  148 atgcattgttca-accaactgagttaaactcacgaggacag 187  Q
    ||||||||| || ||||||||||||||||||||||||||||    
T  1399194 atgcattgtccataccaactgagttaaactcacgaggacag 1399154  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 187
Target Start/End: Complemental strand, 10026034 - 10025986
Alignment:
Q  140 catatttaatgcattgttcaa-ccaactgagttaaactcacgaggacag 187  Q
    ||||||| ||||||||| ||| ||||||||||||| |||||||||||||    
T  10026034 catattttatgcattgtccaaaccaactgagttaagctcacgaggacag 10025986  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 185
Target Start/End: Complemental strand, 14880473 - 14880406
Alignment:
Q  119 ggatttaaacctcaaactttacatatttaatgcattgttca-accaactgagttaaactcacgaggac 185  Q
    |||||| |||||||||||||  ||||||  ||||||||||| |||||||||||||| |||||||||||    
T  14880473 ggatttgaacctcaaactttgtatattttctgcattgttcataccaactgagttaagctcacgaggac 14880406  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 187
Target Start/End: Complemental strand, 9584642 - 9584591
Alignment:
Q  137 ttacatatttaatgcattgttc-aaccaactgagttaaactcacgaggacag 187  Q
    |||||||||| ||||||||||| || |||||||||||||||||||| |||||    
T  9584642 ttacatattttatgcattgttccaatcaactgagttaaactcacgatgacag 9584591  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 182
Target Start/End: Original strand, 133554 - 133628
Alignment:
Q  108 ggtagtggccaggatttaaacctcaaactttacatatttaatgcattgttcaaccaactgagttaaactcacgag 182  Q
    |||||||||| || ||| || | ||||| |||||||||| |||||| || |||||||||||| ||| ||||||||    
T  133554 ggtagtggccggggtttgaaacccaaaccttacatattttatgcatcgtccaaccaactgagctaagctcacgag 133628  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 184
Target Start/End: Complemental strand, 16193156 - 16193102
Alignment:
Q  131 caaactttacatatttaatgcattgttca-accaactgagttaaactcacgagga 184  Q
    ||||| |||||||||| |||||||||||| |||||||||  ||||||||||||||    
T  16193156 caaaccttacatattttatgcattgttcataccaactgaactaaactcacgagga 16193102  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 3156577 - 3156528
Alignment:
Q  137 ttacatatttaatgcattgttca-accaactgagttaaactcacgaggac 185  Q
    |||||||||| ||||||| | || ||||||||||||||||||||||||||    
T  3156577 ttacatattttatgcattatccataccaactgagttaaactcacgaggac 3156528  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 5739115 - 5739172
Alignment:
Q  137 ttacatatttaatgcattgttca-accaactgagttaaactcacgaggacagctgtgc 193  Q
    |||||||| |||||||||||||  |||||||||||||| || |||||||||| |||||    
T  5739115 ttacatatataatgcattgttcctaccaactgagttaagctgacgaggacagttgtgc 5739172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 187
Target Start/End: Complemental strand, 8543616 - 8543568
Alignment:
Q  140 catatttaatgcattgttcaa-ccaactgagttaaactcacgaggacag 187  Q
    ||||||| ||||||||| ||| ||||||||||||| |||||||||||||    
T  8543616 catattttatgcattgtccaaaccaactgagttaagctcacgaggacag 8543568  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 41344621 - 41344573
Alignment:
Q  135 ctttacatatttaatgcattgt-tcaaccaactgagttaaactcacgag 182  Q
    |||| ||||||| ||||||||| |||||||||||||||||||| |||||    
T  41344621 ctttgcatattttatgcattgtctcaaccaactgagttaaacttacgag 41344573  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 17413350 - 17413400
Alignment:
Q  137 ttacatatttaatgcattgttc-aaccaactgagttaaactcacgaggaca 186  Q
    |||||||||| ||||||| ||| ||||||||||||||||||||||||||||    
T  17413350 ttacatattttatgcattattccaaccaactgagttaaactcacgaggaca 17413400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 17736836 - 17736786
Alignment:
Q  137 ttacatatttaatgcattgttca-accaactgagttaaactcacgaggaca 186  Q
    |||||||||| |||||||||||| |||||||||| ||| ||||||||||||    
T  17736836 ttacatattttatgcattgttcataccaactgagctaagctcacgaggaca 17736786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 185
Target Start/End: Complemental strand, 22559016 - 22558971
Alignment:
Q  141 atatttaatgcattgttcaa-ccaactgagttaaactcacgaggac 185  Q
    |||||| ||||||||| ||| |||||||||||||||||||||||||    
T  22559016 atattttatgcattgtccaaaccaactgagttaaactcacgaggac 22558971  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 186
Target Start/End: Original strand, 42475117 - 42475178
Alignment:
Q  126 aacctcaaactttacatatttaatgcattgttca-accaactgagttaaactcacgaggaca 186  Q
    ||||||| || || ||||||| |||||||||| | |||||||||||||| ||||||||||||    
T  42475117 aacctcagaccttgcatattttatgcattgtttataccaactgagttaagctcacgaggaca 42475178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 184
Target Start/End: Original strand, 4226989 - 4227037
Alignment:
Q  137 ttacatatttaatgcattgtt-caaccaactgagttaaactcacgagga 184  Q
    |||||||||| |||||||||| ||||||| |||||||| ||||||||||    
T  4226989 ttacatattttatgcattgttccaaccaattgagttaagctcacgagga 4227037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 186
Target Start/End: Original strand, 17779016 - 17779060
Alignment:
Q  143 atttaatgcattgt-tcaaccaactgagttaaactcacgaggaca 186  Q
    |||| ||||||||| || |||||||||||||||||||||||||||    
T  17779016 attttatgcattgtctctaccaactgagttaaactcacgaggaca 17779060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 185
Target Start/End: Complemental strand, 21929509 - 21929465
Alignment:
Q  141 atatttaatgcattgttcaaccaactgagttaaactcacgaggac 185  Q
    |||||| ||||||||| |||||||||||| ||| |||||||||||    
T  21929509 atattttatgcattgtccaaccaactgagctaagctcacgaggac 21929465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 181
Target Start/End: Original strand, 32957546 - 32957606
Alignment:
Q  122 tttaaacctcaaactttacatatttaatgcattgttca-accaactgagttaaactcacga 181  Q
    |||||||| ||||| |||||||| | |||||||||||| |||||| ||| |||||||||||    
T  32957546 tttaaaccccaaaccttacatatattatgcattgttcataccaaccgagctaaactcacga 32957606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 181
Target Start/End: Original strand, 20711208 - 20711268
Alignment:
Q  122 tttaaacctcaaactttacatatttaatgcattgtt-caaccaactgagttaaactcacga 181  Q
    |||||||||||||| |||||||||| ||||| |||| | | ||||||||||||||||||||    
T  20711208 tttaaacctcaaaccttacatattttatgcactgttcctagcaactgagttaaactcacga 20711268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 184
Target Start/End: Complemental strand, 51046185 - 51046137
Alignment:
Q  137 ttacatatttaatgcattgttca-accaactgagttaaactcacgagga 184  Q
    |||||||||| ||| |||||||| |||||||||||||||||||||||||    
T  51046185 ttacatattttatgtattgttcataccaactgagttaaactcacgagga 51046137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 43840343 - 43840393
Alignment:
Q  137 ttacatatttaatgcattgttca-accaactgagttaaactcacgaggaca 186  Q
    |||||||||| ||||||||| || | |||||||||||||||||||||||||    
T  43840343 ttacatattttatgcattgtccatatcaactgagttaaactcacgaggaca 43840393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 21041398 - 21041341
Alignment:
Q  126 aacctcaaactttacatatttaatgcattgttca-accaactgagttaaactcacgag 182  Q
    |||||||||| || ||||||| ||||||||| || |||||||||| ||||||||||||    
T  21041398 aacctcaaacatttcatattttatgcattgtccataccaactgaggtaaactcacgag 21041341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 45701371 - 45701326
Alignment:
Q  137 ttacatatttaatgcattgttca-accaactgagttaaactcacga 181  Q
    |||||||||| |||||||||||| |||||||||| |||||||||||    
T  45701371 ttacatattttatgcattgttcataccaactgagctaaactcacga 45701326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 52262173 - 52262226
Alignment:
Q  126 aacctcaaactttacatatttaatgcattgttca-accaactgagttaaactca 178  Q
    |||||| |||||| ||||||| |||||||||||| |||||||||||||| ||||    
T  52262173 aacctcgaactttgcatattttatgcattgttcataccaactgagttaagctca 52262226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 182
Target Start/End: Original strand, 3573325 - 3573388
Alignment:
Q  119 ggatttaaacctcaaactttacatatttaatgcattgttca-accaactgagttaaactcacgag 182  Q
    |||||||||| |||||| |||||||| | |||||||||||  |||||||||||||| ||||||||    
T  3573325 ggatttaaac-tcaaaccttacatatattatgcattgttcctaccaactgagttaagctcacgag 3573388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 186
Target Start/End: Original strand, 6423790 - 6423830
Alignment:
Q  147 aatgcattgttca-accaactgagttaaactcacgaggaca 186  Q
    ||||||||||||| |||||||||||||| ||||||||||||    
T  6423790 aatgcattgttcataccaactgagttaagctcacgaggaca 6423830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 118862 - 118812
Alignment:
Q  137 ttacatatttaatgcattgttcaa-ccaactgagttaaactcacgaggaca 186  Q
    |||||||||| ||||||||||||| ||||||||| ||| ||||||||||||    
T  118862 ttacatattttatgcattgttcaaaccaactgagctaagctcacgaggaca 118812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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