View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10151A_high_45 (Length: 231)
Name: NF10151A_high_45
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_high_45 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 7 - 231
Target Start/End: Original strand, 3308180 - 3308404
Alignment:
| Q |
7 |
aagaagaaagtgaatgaggaaaagaatttatggagaagaatcaaacttgaaaacttgtaggactacctaaggatcaaagggtagttggatggaagtggag |
106 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3308180 |
aagaagaaagtgaatgaggaaaagaattcatggagaagaatcaaacttgaaaacttgtgggactacctaaggatcaaagggtagttggatggaagtggag |
3308279 |
T |
|
| Q |
107 |
gtcgatgcctataacagggttcaagaatttcttggacttgatcagttttgctgaagagtaattcgagcactcaagagagcaacaagtggttgatgggtaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
3308280 |
gtcgatgcctataacagggttcaagaatttctcggacttgatcagttttgctgaagagtaatttcggcactcaagagagcaacaagtggttgatgggtaa |
3308379 |
T |
|
| Q |
207 |
atattgagcattaccacttatttga |
231 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
3308380 |
atattgagcattaccacttatttga |
3308404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 170
Target Start/End: Original strand, 4386380 - 4386426
Alignment:
| Q |
124 |
ggttcaagaatttcttggacttgatcagttttgctgaagagtaattc |
170 |
Q |
| |
|
|||||||||||| |||||||||| ||| ||||| ||||||||||||| |
|
|
| T |
4386380 |
ggttcaagaattgcttggacttggtcaattttgttgaagagtaattc |
4386426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 105
Target Start/End: Complemental strand, 16257364 - 16257296
Alignment:
| Q |
37 |
tggagaagaatcaaacttgaaaacttgtaggactacctaaggatcaaagggtagttggatggaagtgga |
105 |
Q |
| |
|
|||| ||||| |||||||| ||||||||| |||||||| | ||||||||||||||||| ||||||| |
|
|
| T |
16257364 |
tggaaaagaaccaaacttggaaacttgtaaagctacctaaacaccaaagggtagttggatgcaagtgga |
16257296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 16626784 - 16626852
Alignment:
| Q |
37 |
tggagaagaatcaaacttgaaaacttgtaggactacctaaggatcaaagggtagttggatggaagtgga |
105 |
Q |
| |
|
|||| ||||| ||||||||||||||||| |||||||| | ||||||||||||||||| ||||||| |
|
|
| T |
16626784 |
tggaaaagaaccaaacttgaaaacttgtgaagctacctaaacaccaaagggtagttggatgcaagtgga |
16626852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University