View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10151A_high_48 (Length: 229)
Name: NF10151A_high_48
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_high_48 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 4842373 - 4842186
Alignment:
| Q |
18 |
aatattggctcactcccaagttggttgataaataatgatggcatacaatatttggatctatcaaacaacaattttagtggtttgcttccggaagatattg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4842373 |
aatattggctcactcccaagttggttgataaataatgttggcatacaatatttggatctatcaaacaacaattttagtggtttgcttccagaagatattg |
4842274 |
T |
|
| Q |
118 |
gtatattccttcctagtattacctatttgaacttttcaatgaatagctttgaaggaaatataccttcatcaattggtaagatgaaaaa |
205 |
Q |
| |
|
||||||||||||||||| |||||||| |||| |||||| |||| |||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4842273 |
gtatattccttcctagtgttacctatatgaatttttcatcaaataactttgaaggaaatataccttcatcaatttgtaagatgaaaaa |
4842186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 22 - 208
Target Start/End: Original strand, 5173159 - 5173339
Alignment:
| Q |
22 |
ttggctcactcccaagttggttgataaataatgatggcatacaatatttggatctatcaaacaacaattttagtggtttgcttccggaagatattggtat |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
5173159 |
ttggctcactcccaagttggttgataaataatgatgccatacaatatttggatctatcaaacaacaattttagtggtttgcttccagaaga------tat |
5173252 |
T |
|
| Q |
122 |
attccttcctagtattacctatttgaacttttcaatgaatagctttgaaggaaatataccttcatcaattggtaagatgaaaaatct |
208 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5173253 |
attccttccaagtattacctatttgaacttttcatggaatagctttgaaggaaatataccttcatcaattggtaagatgaaaaatct |
5173339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 22 - 203
Target Start/End: Original strand, 7142422 - 7142606
Alignment:
| Q |
22 |
ttggctcactcccaag---ttggttgataaataatgatggcatacaatatttggatctatcaaacaacaattttagtggtttgcttccggaagatattgg |
118 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||| |||||| |||||||| |||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
7142422 |
ttggctcactcccaagaaattggttgatacataatgatgggatacaacatttggatatatcaaacaacaatttaagtggtttgcttccagaagatattgg |
7142521 |
T |
|
| Q |
119 |
tatattccttcctagtattacctatttgaacttttcaatgaatagctttgaaggaaatataccttcatcaattggtaagatgaaa |
203 |
Q |
| |
|
|||||||||||||||| || |||| ||||||||||| ||||||||||| ||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
7142522 |
tatattccttcctagtgttgactatctgaacttttcattgaatagctttcaaggaaatataccttaatcaattggtatgatgaaa |
7142606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 23 - 203
Target Start/End: Original strand, 5195886 - 5196069
Alignment:
| Q |
23 |
tggctcactcccaagt---tggttgataaataatgatggcatacaatatttggatctatcaaacaacaattttagtggtttgcttccggaagatattggt |
119 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||| ||| |||||||||| |||||||||||||||| |||||||||||||| ||||||| ||| |
|
|
| T |
5195886 |
tggctcactcccaagtaattggttgatacataatgatgacatgatatatttggatatatcaaacaacaatttgagtggtttgcttccaaaagatatcggt |
5195985 |
T |
|
| Q |
120 |
atattccttcctagtattacctatttgaacttttcaatgaatagctttgaaggaaatataccttcatcaattggtaagatgaaa |
203 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5195986 |
atattccttcctaatgttacctatttgaacttttcatggaatagctttgaaggaaatataccttcatcaattggtaagatgaaa |
5196069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 22 - 203
Target Start/End: Original strand, 5182488 - 5182669
Alignment:
| Q |
22 |
ttggctcactcccaagttggttgataaataatgatggcatacaatatttggatctatcaaacaacaattttagtggtttgcttccggaagatattggtat |
121 |
Q |
| |
|
|||| ||| ||||||||||||||||| ||||| || ||| | ||||||||| |||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
5182488 |
ttggttcattcccaagttggttgatagataatcataacatgaattatttggatatatcaaacaacaatttgagtggtttgcttccaaaagatattggtat |
5182587 |
T |
|
| Q |
122 |
attccttcctagtattacctatttgaacttttcaatgaatagctttgaaggaaatataccttcatcaattggtaagatgaaa |
203 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5182588 |
attccttcctagtgttaagtatttgaacttttcatggaatagctttgaaggaaatataccttcatcaattggtaagatgaaa |
5182669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 22 - 179
Target Start/End: Complemental strand, 4856843 - 4856686
Alignment:
| Q |
22 |
ttggctcactcccaagttggttgataaataatgatggcatacaatatttggatctatcaaacaacaattttagtggtttgcttccggaagatattggtat |
121 |
Q |
| |
|
|||| ||| ||||||||| ||||||| ||||| || ||| | ||||||||| |||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
4856843 |
ttggttcattcccaagttcgttgatagataatcataacatgaattatttggatatatcaaacaacaatttgagtggtttgcttccaaaagatattggtat |
4856744 |
T |
|
| Q |
122 |
attccttcctagtattacctatttgaacttttcaatgaatagctttgaaggaaatata |
179 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
4856743 |
attccttcctagtgttacctatttgaacatttcatggaatagctttgaaggaaatata |
4856686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 64 - 205
Target Start/End: Original strand, 5214087 - 5214228
Alignment:
| Q |
64 |
aatatttggatctatcaaacaacaattttagtggtttgcttccggaagatattggtatattccttcctagtattacctatttgaacttttcaatgaatag |
163 |
Q |
| |
|
||||||||||| |||||| ||||| ||| |||||||| ||||| |||||||||||||||||||||||||| |||||||| |||| |||||| |||| |
|
|
| T |
5214087 |
aatatttggatatatcaatcaacagtttaagtggttttcttccaaaagatattggtatattccttcctagtgttacctatatgaatttttcatcaaataa |
5214186 |
T |
|
| Q |
164 |
ctttgaaggaaatataccttcatcaattggtaagatgaaaaa |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5214187 |
ctttgaaggaaatataccttcatcaattggtaagatgaaaaa |
5214228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 22 - 205
Target Start/End: Original strand, 5160243 - 5160426
Alignment:
| Q |
22 |
ttggctcactcccaagttggttgataaataatgatggcatacaatatttggatctatcaaacaacaattttagtggtttgcttccggaagatattggtat |
121 |
Q |
| |
|
|||||||| |||||||||||||||| ||||| || ||| | ||||||||| |||||||||||||||| ||||| ||||| | ||||| ||| | | |
|
|
| T |
5160243 |
ttggctcatccccaagttggttgatacataatcataacattaattatttggatatatcaaacaacaatttaagtgggttgctaacaaaagattttgattt |
5160342 |
T |
|
| Q |
122 |
attccttcctagtattacctatttgaacttttcaatgaatagctttgaaggaaatataccttcatcaattggtaagatgaaaaa |
205 |
Q |
| |
|
||||||||| ||| ||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5160343 |
attccttccaagtgctacacagttgaacttttcatggaatagctttgaaggaaatataccttcatcaattggtaagataaaaaa |
5160426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 5203293 - 5203345
Alignment:
| Q |
22 |
ttggctcactcccaagttggttgataaataatgatggcatacaatatttggat |
74 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
5203293 |
ttggctcattcccaagttggttgatacataatgatgatatacaatatttggat |
5203345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University