View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151A_high_49 (Length: 229)
Name: NF10151A_high_49
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_high_49 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 229
Target Start/End: Complemental strand, 38884110 - 38883896
Alignment:
| Q |
15 |
catcatcatgagggtcataccatagacttttttcctgcccatcttatcaccaagccagccaaagaaaagttgccctgaaagtgttccacagaaagctaca |
114 |
Q |
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| T |
38884110 |
catcatcatgagggtcataccatagacttttttcctgcccatcttatcaccaagccagccaaagaaaagttgccctgaaagtgttccacagaaagctaca |
38884011 |
T |
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| Q |
115 |
ccattcacagcagctgatacattgggaggcaatgtaccgggcttcgcagcaccatcaacgtggtagtatatgcgaccgagcaactttgtaacaagggata |
214 |
Q |
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| T |
38884010 |
ccattcacagcagctgatacattgggaggcaatgtaccgggcttcgcagcaccatcaacgtggtagtatatgcgaccgagcaactttgtaacaagggata |
38883911 |
T |
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| Q |
215 |
cacagaacagatcat |
229 |
Q |
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||||||||||||||| |
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| T |
38883910 |
cacagaacagatcat |
38883896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 38893298 - 38893088
Alignment:
| Q |
19 |
atcatgagggtcataccatagacttttttcctgcccatcttatcaccaagccagccaaagaaaagttgccctgaaagtgttccacagaaagctacaccat |
118 |
Q |
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| T |
38893298 |
atcatcagtgtcataccatacactttcttcctacccaacttatcaccaagccagccaaagaaaagctgccctgtaagtgtaccacagaaagcaaccccat |
38893199 |
T |
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| Q |
119 |
tcacagcagctgatacattgggaggcaatgtaccgggcttcgcagcaccatcaacgtggtagtatatgcgaccgagcaactttgtaacaagggatacaca |
218 |
Q |
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| T |
38893198 |
taaccgcagctgatacattgggtggcaatgtaccgggcttcccggcaccatcaacatggtaatatatgcgtcccagcaacttggtaacaagggatatgca |
38893099 |
T |
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| Q |
219 |
gaacagatcat |
229 |
Q |
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| T |
38893098 |
gaacagatcat |
38893088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 33 - 146
Target Start/End: Original strand, 37315993 - 37316106
Alignment:
| Q |
33 |
accatagacttttttcctgcccatcttatcaccaagccagccaaagaaaagttgccctgaaagtgttccacagaaagctacaccattcacagcagctgat |
132 |
Q |
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| T |
37315993 |
accataaactttttttcttcccattttgtccccaagccaaccaaagaaaagttggcctgctagagtgccacagagagcaacaccatttactgctgctgat |
37316092 |
T |
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| Q |
133 |
acattgggaggcaa |
146 |
Q |
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| T |
37316093 |
acatttggaggcaa |
37316106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 119
Target Start/End: Complemental strand, 33115227 - 33115133
Alignment:
| Q |
25 |
agggtcataccatagacttttttcctgcccatcttatcaccaagccagccaaagaaaagttgccctgaaagtgttccacagaaagctacaccatt |
119 |
Q |
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|||||||| ||||| ||| ||| || ||||| || ||||||||||| |||||||||||||| |||| |||| ||||| |||||| |||||||| |
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| T |
33115227 |
agggtcattccataaactcgttttcttcccattttgtcaccaagccaaccaaagaaaagttgtcctgccagtgctccactgaaagcaacaccatt |
33115133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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