View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10151A_low_11 (Length: 453)

Name: NF10151A_low_11
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10151A_low_11
NF10151A_low_11
[»] chr8 (5 HSPs)
chr8 (1-247)||(556374-556628)
chr8 (244-412)||(556683-556851)
chr8 (282-412)||(22573077-22573207)
chr8 (282-412)||(31734258-31734388)
chr8 (359-412)||(11066502-11066555)
[»] chr1 (11 HSPs)
chr1 (285-412)||(26793702-26793829)
chr1 (282-412)||(19806799-19806931)
chr1 (285-412)||(4076389-4076516)
chr1 (299-412)||(50004939-50005052)
chr1 (285-412)||(4950136-4950263)
chr1 (298-412)||(9383270-9383384)
chr1 (359-412)||(6768281-6768334)
chr1 (329-405)||(28883929-28884005)
chr1 (283-407)||(30209689-30209813)
chr1 (365-412)||(614929-614976)
chr1 (282-319)||(12855371-12855408)
[»] chr4 (6 HSPs)
chr4 (319-412)||(44125983-44126076)
chr4 (283-411)||(19181457-19181585)
chr4 (283-402)||(45413823-45413942)
chr4 (347-412)||(2183302-2183367)
chr4 (347-412)||(36625579-36625644)
chr4 (339-404)||(55945703-55945768)
[»] chr2 (6 HSPs)
chr2 (291-411)||(40626420-40626540)
chr2 (285-412)||(6457543-6457670)
chr2 (348-403)||(7670385-7670440)
chr2 (347-402)||(40054516-40054571)
chr2 (342-403)||(5256379-5256440)
chr2 (368-412)||(6452491-6452535)
[»] chr5 (3 HSPs)
chr5 (284-411)||(32529420-32529549)
chr5 (286-402)||(34731215-34731331)
chr5 (361-412)||(13109730-13109781)
[»] chr6 (2 HSPs)
chr6 (291-412)||(8573831-8573952)
chr6 (291-412)||(8547478-8547599)
[»] chr3 (4 HSPs)
chr3 (292-401)||(40416900-40417009)
chr3 (142-210)||(46713885-46713953)
chr3 (370-412)||(38457767-38457809)
chr3 (347-412)||(51976195-51976260)
[»] chr7 (7 HSPs)
chr7 (283-412)||(2334029-2334161)
chr7 (282-412)||(41482463-41482593)
chr7 (284-411)||(5784255-5784382)
chr7 (329-412)||(24429679-24429762)
chr7 (347-393)||(41147920-41147966)
chr7 (295-412)||(23318981-23319098)
chr7 (304-412)||(39594599-39594707)


Alignment Details
Target: chr8 (Bit Score: 158; Significance: 7e-84; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 556374 - 556628
Alignment:
Q  1 gaataaaactataattattcacttgggtaagtgaattagagattatgcaggcgtgcattatttgaagagaacaatattgcaatgcaaggaaattaagtga 100  Q
    |||||||||||| |||||||||||||| |||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||| |          
T  556374 gaataaaactatcattattcacttgggcaagtgaattagagattgtgcatgcgtgctttatttgaagagaacaatattgcaatgcaaggaaagt------ 556467  T
Q  101 tcatatttttagattacatggattgaggttgactaatctggac---------------ctcaacgagttcattaagaatatcaacgacaagaattgaggc 185  Q
     ||||||||||||||||||||||||||||||||||||||| ||               ||||||||||||||||||||||||||||||||||||||||||    
T  556468 -catatttttagattacatggattgaggttgactaatctgaactacaataaagcttacctcaacgagttcattaagaatatcaacgacaagaattgaggc 556566  T
Q  186 tttattagggaagaacctgcaaataggaagttcataatcaattacatattacaatatataga 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  556567 tttattagggaagaacctgcaaataggaagttcataatcaattacatattacaatatataga 556628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 244 - 412
Target Start/End: Original strand, 556683 - 556851
Alignment:
Q  244 tagaaataaaacaatgagcaatcagtcataacattggtcccgtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatc 343  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |    
T  556683 tagaaataaaacaatgagaaatcagtcataacattgggcccgtttgatgcacatgataaggagataggatatgataaaccaatcatatcctgatccaaac 556782  T
Q  344 cgctgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcctattcaccctttg 412  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  556783 cgctgtttcgtgcaacaatagaaaatgataaattaaacctatttctaatcatatcctattcaccctttg 556851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 282 - 412
Target Start/End: Original strand, 22573077 - 22573207
Alignment:
Q  282 cccgtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaac 381  Q
    |||||||| ||| ||||||||||||| | |||||||| |    ||| ||||||||  ||||||| ||||| ||||| ||| || ||||||||| || |||    
T  22573077 cccgtttggtgcgcatgataaggagacatgatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaac 22573176  T
Q  382 ttatttctaatcctatcctattcaccctttg 412  Q
     | ||||||||||||||||||| | ||||||    
T  22573177 ctgtttctaatcctatcctattgaacctttg 22573207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 412
Target Start/End: Original strand, 31734258 - 31734388
Alignment:
Q  282 cccgtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaac 381  Q
    |||||||| |||||||||||  |||| | |||||||||   |  || ||||||| |  |||||| ||||| ||||| |||||  ||||||||||||||||    
T  31734258 cccgtttggtgcacatgatagagagacatgatatgataggactttcctatcctgctttaatccgttgtttggtgcaccaataagaaatgataaattaaac 31734357  T
Q  382 ttatttctaatcctatcctattcaccctttg 412  Q
     |||||| |||| ||||| || |||||||||    
T  31734358 ctatttccaatcttatcccatccaccctttg 31734388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 412
Target Start/End: Original strand, 11066502 - 11066555
Alignment:
Q  359 caatagaaaatgataaattaaacttatttctaatcctatcctattcaccctttg 412  Q
    |||||| ||| ||||| |||||| ||||||||||||||||||| ||| ||||||    
T  11066502 caataggaaaggataacttaaacctatttctaatcctatcctactcagcctttg 11066555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 8e-28; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 285 - 412
Target Start/End: Original strand, 26793702 - 26793829
Alignment:
Q  285 gtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaactta 384  Q
    ||||| ||||||||||||| ||| | ||||||||| | | ||| ||||||||| ||||||| ||||| ||||| |||||||||| ||||| |||||||||    
T  26793702 gtttggtgcacatgataagaagacatgatatgatagaactatcatatcctgattcaatccgttgtttggtgcaccaatagaaaaggataacttaaactta 26793801  T
Q  385 tttctaatcctatcctattcaccctttg 412  Q
    ||||||||||||||||| ||| ||||||    
T  26793802 tttctaatcctatcctaatcaacctttg 26793829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 282 - 412
Target Start/End: Complemental strand, 19806931 - 19806799
Alignment:
Q  282 cccgtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgt--gcaacaatagaaaatgataaattaa 379  Q
    |||||||| ||||||||||||||||||||||||||||||  | ||| |||||| || ||||| | ||||| ||  ||| |||||| ||| ||||||||||    
T  19806931 cccgtttggtgcacatgataaggagataggatatgataacactatcctatccttattcaatctggtgtttggtttgcatcaataggaaaggataaattaa 19806832  T
Q  380 acttatttctaatcctatcctattcaccctttg 412  Q
    || |||||||||||||||||||||||| |||||    
T  19806831 acctatttctaatcctatcctattcactctttg 19806799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 285 - 412
Target Start/End: Complemental strand, 4076516 - 4076389
Alignment:
Q  285 gtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaactta 384  Q
    ||||| ||||||||||||||||||||||||||||||  | ||| || ||| ||  |||| | ||||| ||||| |||||| ||| |||||||||||| ||    
T  4076516 gtttggtgcacatgataaggagataggatatgataacactatcatacccttatttaatctggtgtttggtgcatcaataggaaaggataaattaaaccta 4076417  T
Q  385 tttctaatcctatcctattcaccctttg 412  Q
    || ||||||||||||||||||| |||||    
T  4076416 ttactaatcctatcctattcactctttg 4076389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 299 - 412
Target Start/End: Complemental strand, 50005052 - 50004939
Alignment:
Q  299 ataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatc 398  Q
    ||||| ||||||||||||||||| | ||| |||| | ||| |||  | ||||| ||||| ||||| |||| ||||| |||||| ||||||||||||||||    
T  50005052 ataagaagataggatatgataaaactatcatatcttaatctaatttgatgtttggtgcaccaataaaaaaggataatttaaacctatttctaatcctatc 50004953  T
Q  399 ctattcaccctttg 412  Q
    ||| ||||||||||    
T  50004952 ctaatcaccctttg 50004939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 285 - 412
Target Start/End: Original strand, 4950136 - 4950263
Alignment:
Q  285 gtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaactta 384  Q
    ||||| ||||||||||||| | ||| ||||||||||||  ||| |||| || | ||||  | ||||| ||||| |||||||||||||||| ||||||| |    
T  4950136 gtttggtgcacatgataagaaaataagatatgataaacatatcctatcttgtttcaatttgatgtttggtgcatcaatagaaaatgataatttaaactca 4950235  T
Q  385 tttctaatcctatcctattcaccctttg 412  Q
    |||  |||| ||||||||| ||||||||    
T  4950236 ttttcaatcatatcctatttaccctttg 4950263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 412
Target Start/End: Complemental strand, 9383384 - 9383270
Alignment:
Q  298 gataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctat 397  Q
    |||| ||||| | ||||||||||| | |||  ||||||||  |||||  ||||| ||||| |||||| ||  ||||||||||||  |||||||||| |||    
T  9383384 gatagggagaaaagatatgataaaactatcacatcctgattaaatccattgtttggtgcaccaataggaacggataaattaaaccaatttctaatcttat 9383285  T
Q  398 cctattcaccctttg 412  Q
    |||| ||||||||||    
T  9383284 cctactcaccctttg 9383270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 359 - 412
Target Start/End: Original strand, 6768281 - 6768334
Alignment:
Q  359 caatagaaaatgataaattaaacttatttctaatcctatcctattcaccctttg 412  Q
    ||||||||||||||||||||||||||||||  ||||||| |||| || ||||||    
T  6768281 caatagaaaatgataaattaaacttatttcctatcctattctatccaacctttg 6768334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 405
Target Start/End: Complemental strand, 28884005 - 28883929
Alignment:
Q  329 tatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcctattca 405  Q
    |||| |||| |||||| |||||| ||||| |||||| | | |||||||||||||| || ||||||||||| ||||||    
T  28884005 tatcttgattcaatccactgtttggtgcaccaatagtataggataaattaaactttttcctaatcctatcttattca 28883929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 283 - 407
Target Start/End: Original strand, 30209689 - 30209813
Alignment:
Q  283 ccgtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaact 382  Q
    ||||||| ||||||||||||| ||  ||| |||||||||   ||| ||||||  |  |||| | ||||| || || ||||||||||||||||| ||| ||    
T  30209689 ccgtttggtgcacatgataagaagtcagggtatgataaaattatcatatcctacttaaatctgttgtttggtacaccaatagaaaatgataaaataatct 30209788  T
Q  383 tatttctaatcctatcctattcacc 407  Q
     ||| || |||||||||||||||||    
T  30209789 cattacttatcctatcctattcacc 30209813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 412
Target Start/End: Complemental strand, 614976 - 614929
Alignment:
Q  365 aaaatgataaattaaacttatttctaatcctatcctattcaccctttg 412  Q
    |||||||||||||||||| |||||||||| ||| ||| ||||||||||    
T  614976 aaaatgataaattaaactaatttctaatcttattctactcaccctttg 614929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 319
Target Start/End: Complemental strand, 12855408 - 12855371
Alignment:
Q  282 cccgtttgatgcacatgataaggagataggatatgata 319  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  12855408 cccgtttggtgcacatgataaggagacaggatatgata 12855371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 319 - 412
Target Start/End: Original strand, 44125983 - 44126076
Alignment:
Q  319 aaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcctattcaccctttg 412  Q
    ||||||||| ||||||||||||||  ||| ||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  44125983 aaaccaatcatatcctgatccaatatgctatttggtgcagcaataggaaatgataaattaaacttatttctaatcctatcctattcaccttttg 44126076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 283 - 411
Target Start/End: Complemental strand, 19181585 - 19181457
Alignment:
Q  283 ccgtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaact 382  Q
    ||||||| |||||||||||  |||| | |||||||||||   ||| |||||||||||||||   ||||| ||||| ||| |  | ||||||||||||||     
T  19181585 ccgtttggtgcacatgatagagagacatgatatgataaaattatcctatcctgatccaatctattgtttggtgcaccaacatgatatgataaattaaacc 19181486  T
Q  383 tatttctaatcctatcctattcacccttt 411  Q
    ||||||||||||||||||| ||| |||||    
T  19181485 tatttctaatcctatcctactcatccttt 19181457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 402
Target Start/End: Complemental strand, 45413942 - 45413823
Alignment:
Q  283 ccgtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaact 382  Q
    ||||||| ||||| ||||| ||||| |||||| |||| | | ||| |||| |||| ||||| | ||||| ||||| |||||| ||| ||||||||||||     
T  45413942 ccgtttggtgcacttgatagggagacaggataggatagaactatcatatcttgattcaatcggttgtttggtgcaccaataggaaaggataaattaaacc 45413843  T
Q  383 tatttctaatcctatcctat 402  Q
    ||||||  ||||||||||||    
T  45413842 tatttcctatcctatcctat 45413823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 347 - 412
Target Start/End: Original strand, 2183302 - 2183367
Alignment:
Q  347 tgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcctattcaccctttg 412  Q
    ||||| ||||| |||||||||| ||||||||||||| ||||| ||||||||||||| || ||||||    
T  2183302 tgtttggtgcaccaatagaaaaggataaattaaactcatttccaatcctatcctatccaacctttg 2183367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 347 - 412
Target Start/End: Complemental strand, 36625644 - 36625579
Alignment:
Q  347 tgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcctattcaccctttg 412  Q
    ||||| |||||  ||||| | |||||||||||||| |||| | |||||||||||||||||||||||    
T  36625644 tgtttggtgcactaataggatatgataaattaaacctattacgaatcctatcctattcaccctttg 36625579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 404
Target Start/End: Complemental strand, 55945768 - 55945703
Alignment:
Q  339 caatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcctattc 404  Q
    ||||||| ||||| ||||| |||||| ||| |||||||  ||  ||||||||||||||||||||||    
T  55945768 caatccgttgtttggtgcaccaataggaaaggataaatccaatctatttctaatcctatcctattc 55945703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 291 - 411
Target Start/End: Original strand, 40626420 - 40626540
Alignment:
Q  291 tgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttcta 390  Q
    ||||||||||| | ||| ||||||||||||| | ||| |||| |||| ||||| ||||||| ||||| |||||| ||| ||||| |||||  ||||||||    
T  40626420 tgcacatgataggaagacaggatatgataaaactatcatatcttgattcaatctgctgtttggtgcaccaataggaaaggataatttaaatatatttcta 40626519  T
Q  391 atcctatcctattcacccttt 411  Q
    ||||||||||| |||||||||    
T  40626520 atcctatcctactcacccttt 40626540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 285 - 412
Target Start/End: Original strand, 6457543 - 6457670
Alignment:
Q  285 gtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaactta 384  Q
    ||||| |||||||||||  |||| ||||||||||| | | ||| |||| |||| ||||| | ||||| ||||| ||||||||||||||||||||||   |    
T  6457543 gtttggtgcacatgatagagagacaggatatgatagaactatcatatcatgattcaatctgttgtttggtgcaccaatagaaaatgataaattaaatcaa 6457642  T
Q  385 tttctaatcctatcctattcaccctttg 412  Q
    |||| |||| |||| ||| |||||||||    
T  6457643 tttccaatcatatcttatccaccctttg 6457670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 403
Target Start/End: Original strand, 7670385 - 7670440
Alignment:
Q  348 gtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcctatt 403  Q
    |||| ||||| |||||||||||||||| || ||| | |||||||||||||||||||    
T  7670385 gtttggtgcaccaatagaaaatgataagtttaacctgtttctaatcctatcctatt 7670440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 402
Target Start/End: Complemental strand, 40054571 - 40054516
Alignment:
Q  347 tgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcctat 402  Q
    ||||| ||||| ||||||||||||||||| ||||| ||||  ||||||||||||||    
T  40054571 tgtttggtgcaccaatagaaaatgataaactaaacctattgttaatcctatcctat 40054516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 403
Target Start/End: Original strand, 5256379 - 5256440
Alignment:
Q  342 tccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcctatt 403  Q
    |||||||||| ||||| |  ||| |||||||||||||||||| ||  |||||||||||||||    
T  5256379 tccgctgtttggtgcaccggtaggaaatgataaattaaacttgttgttaatcctatcctatt 5256440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 412
Target Start/End: Original strand, 6452491 - 6452535
Alignment:
Q  368 atgataaattaaacttatttctaatcctatcctattcaccctttg 412  Q
    |||||||||||||| |||| |||||| |||||||||||| |||||    
T  6452491 atgataaattaaacctattactaatcttatcctattcacgctttg 6452535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 284 - 411
Target Start/End: Complemental strand, 32529549 - 32529420
Alignment:
Q  284 cgtttgatgcacatgataaggagataggatatgataaaccaatcgtat--cctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaac 381  Q
    |||||||||||||||||||| ||| | ||||||||||| | ||| |||  | |  | ||||||||||||| ||||| ||||| ||||  |||||||||||    
T  32529549 cgtttgatgcacatgataagaagacaagatatgataaaactatcatatatcttacttcaatccgctgtttggtgcaccaataaaaaagaataaattaaac 32529450  T
Q  382 ttatttctaatcctatcctattcacccttt 411  Q
    |||||||||||| |||| |||||| |||||    
T  32529449 ttatttctaatcatatcttattcatccttt 32529420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 402
Target Start/End: Original strand, 34731215 - 34731331
Alignment:
Q  286 tttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttat 385  Q
    |||| ||| |||||||| |||||||||||||||||  | ||| ||||||  |  |||||  ||||| ||||| |||||| ||| |||||| ||||| |||    
T  34731215 tttggtgcgcatgataaagagataggatatgataacactatcatatcctatttaaatcccttgtttggtgcaccaataggaaaggataaactaaacctat 34731314  T
Q  386 ttctaatcctatcctat 402  Q
    |  ||||||||||||||    
T  34731315 tgttaatcctatcctat 34731331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 412
Target Start/End: Original strand, 13109730 - 13109781
Alignment:
Q  361 atagaaaatgataaattaaacttatttctaatcctatcctattcaccctttg 412  Q
    |||||||||||||| || ||| ||||||||||| |||||||| |||||||||    
T  13109730 atagaaaatgataagtttaacatatttctaatcatatcctatccaccctttg 13109781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 291 - 412
Target Start/End: Complemental strand, 8573952 - 8573831
Alignment:
Q  291 tgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttcta 390  Q
    ||||||||||||| | | || |||||||||| ||||  ||||||| | |||||| | |||| | ||| |||||| ||||||||| |||||| ||||||||    
T  8573952 tgcacatgataagaaaacagaatatgataaaacaattctatcctgtttcaatcctccgtttggagcatcaataggaaatgataacttaaacctatttcta 8573853  T
Q  391 atcctatcctattcaccctttg 412  Q
    ||| |||| |||||||||||||    
T  8573852 atcttatcatattcaccctttg 8573831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 291 - 412
Target Start/End: Complemental strand, 8547599 - 8547478
Alignment:
Q  291 tgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttcta 390  Q
    ||||||||||| | | | || |||||||||| ||||  |||| || | |||||||| |||| | ||| |||||| ||| ||||| |||||| ||||||||    
T  8547599 tgcacatgataggaaaacagaatatgataaaacaattctatcatgtttcaatccgccgtttggagcatcaataggaaaggataacttaaacctatttcta 8547500  T
Q  391 atcctatcctattcaccctttg 412  Q
    ||| |||| |||||||||||||    
T  8547499 atcttatcatattcaccctttg 8547478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 292 - 401
Target Start/End: Original strand, 40416900 - 40417009
Alignment:
Q  292 gcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttctaa 391  Q
    |||||||||| | ||| ||||||||| ||| | ||| ||||||| | ||||||| ||||| ||||| ||| ||||||||||||||||||  ||||| |||    
T  40416900 gcacatgataggaagacaggatatgaaaaaactatcatatcctgcttcaatccgttgtttggtgcatcaacagaaaatgataaattaaatatatttttaa 40416999  T
Q  392 tcctatccta 401  Q
    ||||||||||    
T  40417000 tcctatccta 40417009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 46713953 - 46713885
Alignment:
Q  142 acctcaacgagttcattaagaatatcaacgacaagaattgaggctttattagggaagaacctgcaaata 210  Q
    |||||||| | |||||| |||||||||||  || |||||| |||||||| |||||||||||| ||||||    
T  46713953 acctcaactaattcatttagaatatcaactgcaggaattgtggctttatcagggaagaacctacaaata 46713885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 412
Target Start/End: Original strand, 38457767 - 38457809
Alignment:
Q  370 gataaattaaacttatttctaatcctatcctattcaccctttg 412  Q
    ||||| ||||||| |||||||||||||||||||||||| ||||    
T  38457767 gataatttaaactcatttctaatcctatcctattcaccttttg 38457809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 412
Target Start/End: Original strand, 51976195 - 51976260
Alignment:
Q  347 tgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcctattcaccctttg 412  Q
    ||||| ||||| ||||||||||||||||  |||   ||||||||||| ||||||||||||| ||||    
T  51976195 tgtttggtgcaccaatagaaaatgataagctaaggctatttctaatcttatcctattcaccatttg 51976260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 283 - 412
Target Start/End: Complemental strand, 2334161 - 2334029
Alignment:
Q  283 ccgtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctga---tccaatccgctgtttcgtgcaacaatagaaaatgataaattaa 379  Q
    ||||||||||| ||||||||||||| | ||||||||||  | ||| ||||||||   | ||||||| ||||| ||||| |||||| |   ||||| ||||    
T  2334161 ccgtttgatgcgcatgataaggagacatgatatgataacactatcatatcctgaatattcaatccggtgtttggtgcaccaataggattggataacttaa 2334062  T
Q  380 acttatttctaatcctatcctattcaccctttg 412  Q
    || ||||| ||||||||||||||||||| ||||    
T  2334061 acctatttttaatcctatcctattcaccttttg 2334029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 282 - 412
Target Start/End: Complemental strand, 41482593 - 41482463
Alignment:
Q  282 cccgtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaac 381  Q
    |||||||| ||||||||||| | ||| | |||| |||||| | ||| | |||||||  ||| |||||||| ||||| ||| || ||| ||||| ||||||    
T  41482593 cccgtttggtgcacatgataggaagacatgataggataaaactatcatctcctgatttaatgcgctgtttggtgcaccaacaggaaaggataacttaaac 41482494  T
Q  382 ttatttctaatcctatcctattcaccctttg 412  Q
     ||||| ||||| ||||||| ||||||||||    
T  41482493 ctatttttaatcatatcctactcaccctttg 41482463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 284 - 411
Target Start/End: Original strand, 5784255 - 5784382
Alignment:
Q  284 cgtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaactt 383  Q
    |||||| | |||||||||| ||||||| ||||||| ||   ||  |||| |||||||||| |   ||| ||||| ||||| |||| ||||| ||||||||    
T  5784255 cgtttggtacacatgataaagagatagcatatgatgaaattattatatcttgatccaatcagtaatttggtgcatcaataaaaaaggataagttaaactt 5784354  T
Q  384 atttctaatcctatcctattcacccttt 411  Q
    |||||||||| |||| |||||| |||||    
T  5784355 atttctaatcgtatcatattcatccttt 5784382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 412
Target Start/End: Original strand, 24429679 - 24429762
Alignment:
Q  329 tatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcctattcaccctttg 412  Q
    ||||||||| || || |||| ||  |||| |||||||||||||||| |||||  ||||| |||||||||| || ||||||||||    
T  24429679 tatcctgattcattctgctgcttgatgcaccaatagaaaatgataatttaaaactatttataatcctatcttactcaccctttg 24429762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 393
Target Start/End: Complemental strand, 41147966 - 41147920
Alignment:
Q  347 tgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatc 393  Q
    ||||| ||||| |||||||||| |||||||||||||||||| |||||    
T  41147966 tgtttggtgcatcaatagaaaaggataaattaaacttatttataatc 41147920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 412
Target Start/End: Complemental strand, 23319098 - 23318981
Alignment:
Q  295 catgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcc 394  Q
    ||||||||| ||| ||||||||||||  | ||| |||||||||  |||| | ||||| || || ||| |  ||| ||||| |||||| ||||| ||||||    
T  23319098 catgataagaagacaggatatgataacactatcatatcctgattaaatctgttgtttggtccaccaacatgaaaggataatttaaacctatttttaatcc 23318999  T
Q  395 tatcctattcaccctttg 412  Q
    ||||||||| | ||||||    
T  23318998 tatcctattgagcctttg 23318981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 412
Target Start/End: Original strand, 39594599 - 39594707
Alignment:
Q  304 gagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcctatt 403  Q
    |||| ||||||||||||| | ||| ||||||  |  |||||| ||||| ||||| |||||  | ||| |||||||||| |||| |||||| |||| ||||    
T  39594599 gagagaggatatgataaaactatcatatcctacttaaatccgttgtttggtgcaccaataagatatgctaaattaaacctattactaatcttatcatatt 39594698  T
Q  404 caccctttg 412  Q
    || ||||||    
T  39594699 catcctttg 39594707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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