View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151A_low_115 (Length: 280)
Name: NF10151A_low_115
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_low_115 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 30736337 - 30736062
Alignment:
| Q |
1 |
aaaactagaatattgtcactataaaataacaataaggcactaataacagttnnnnnnn--gttaattagtttatattttgttgtctccatgagattggtg |
98 |
Q |
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| T |
30736337 |
aaaactagaatattgtcactataaaataacaataaggcactaataacagttaaaaaaaaagttaattagtttatattttgttgtctccatgagattggtg |
30736238 |
T |
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| Q |
99 |
tatgactctatgcagaaagcttagtattacttttgttatagactagtgtgtgtttaatatattttatcataatagtgagatgtgatttaaaaggaacata |
198 |
Q |
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| T |
30736237 |
tatgactctatgcagaaagcttagtattacttttgttatagactagtgtgtgtttaatatattttatcataatagtgagatgtgatttaaaaggaacata |
30736138 |
T |
|
| Q |
199 |
tcttagtatgcattaaataattataagggtaaaatcttaaaactaagaaattattatgaatctatattatatataa |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30736137 |
tcttagtatgcattaaataattataagggtaaaatcttaaaactaagaaattattatgaatctatattatatataa |
30736062 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 207
Target Start/End: Complemental strand, 4226315 - 4226255
Alignment:
| Q |
145 |
tgtgtgtttaatatattttatcataatagtgagatgtgatttaaaaggaacatatcttagtat |
207 |
Q |
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| T |
4226315 |
tgtgtgtttaatatattgt--cgtaatagtaacatgtgatttaaaaggaacatatattagtat |
4226255 |
T |
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