View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10151A_low_119 (Length: 276)

Name: NF10151A_low_119
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10151A_low_119
NF10151A_low_119
[»] chr1 (2 HSPs)
chr1 (6-95)||(5251170-5251259)
chr1 (119-256)||(5251279-5251406)


Alignment Details
Target: chr1 (Bit Score: 82; Significance: 9e-39; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 6 - 95
Target Start/End: Original strand, 5251170 - 5251259
Alignment:
Q  6 tttggtgttgatgttggattttatatataaaatgtttctttgctgaaagcacaaaaaacaagtgttacagcataagaatagtggtttttg 95  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  5251170 tttggtgttgatgttggattttatatataaaatgtttctttgcagaaagcacaaaaaacaagtgttacaacataagaatagtggtttttg 5251259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 119 - 256
Target Start/End: Original strand, 5251279 - 5251406
Alignment:
Q  119 ataagaatagtggttaagcactagagcgatgatgaagcgaaggaaatgaaagataagtgtataatgcaaacaattttaacaaacaggttcatccatgata 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||    
T  5251279 ataagaatagtggttaagcactagagcgatgatgaagcgaaggaaatgaaa----------taatgcaaacaattttaacaaacaggttcatccatgata 5251368  T
Q  219 attttaaaacaatcgnnnnnnntatacaaaggaatgaa 256  Q
    |||||||||||||||       ||||||||||||||||    
T  5251369 attttaaaacaatcgaaaaaaatatacaaaggaatgaa 5251406  T

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