View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151A_low_122 (Length: 274)
Name: NF10151A_low_122
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_low_122 |
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Alignment Details
Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 11 - 136
Target Start/End: Original strand, 9215419 - 9215544
Alignment:
| Q |
11 |
ttattctgtgagatttggaatgacctttgtagattacaagaatggtttgaaaagatacgagaaactttctgcattgtggttcaagaattttctcaaaaaa |
110 |
Q |
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| T |
9215419 |
ttattctgtgagatttggaatgacatttgtggattacaagaatggtttgaaaagatacgagaaactttctgcattgtggttcaagaattttctcaaaaaa |
9215518 |
T |
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| Q |
111 |
gaaactaaacttatgtttcttgtgag |
136 |
Q |
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| T |
9215519 |
gaaactaaacttatgtttcttgtgag |
9215544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 206 - 269
Target Start/End: Original strand, 9215614 - 9215677
Alignment:
| Q |
206 |
gttctaaagaggtcctattcaaccgaaaagggagtgaaacatggatgtgtagatatactgatct |
269 |
Q |
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| T |
9215614 |
gttctaaagaggtcctattcaaccaaaaagggaatgaaacatggatgtgtagatatactgatct |
9215677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 21 - 130
Target Start/End: Complemental strand, 25158921 - 25158812
Alignment:
| Q |
21 |
agatttggaatgacctttgtagattacaagaatggtttgaaaagatacgagaaactttctgcattgtggttcaagaattttctcaaaaaagaaactaaac |
120 |
Q |
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| T |
25158921 |
agatttggaatgacctttgttgattataagaatggcttgaaaagataccagaagttgtctgcattgtggtttaagaattttctcaaaaaagaaactaagc |
25158822 |
T |
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| Q |
121 |
ttatgtttct |
130 |
Q |
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| T |
25158821 |
ttatgtttct |
25158812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 103
Target Start/End: Original strand, 25253914 - 25254006
Alignment:
| Q |
11 |
ttattctgtgagatttggaatgacctttgtagattacaagaatggtttgaaaagatacgagaaactttctgcattgtggttcaagaattttct |
103 |
Q |
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| T |
25253914 |
ttatactgtgagatttggaatgacctttgtagattacaaaaatggtttgaaaagatatcaaaagctctcagggttgtggttcaagaattttct |
25254006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 105
Target Start/End: Complemental strand, 25179095 - 25179001
Alignment:
| Q |
11 |
ttattctgtgagatttggaatgacctttgtagattacaagaatggtttgaaaagatacgagaaactttctgcattgtggttcaagaattttctca |
105 |
Q |
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| T |
25179095 |
ttatactgtgagatttggaatgacttttatagattacaaagatggtttgaaaagatatcaaaagctttcaggattgtggttcaagaattttctca |
25179001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 25167393 - 25167300
Alignment:
| Q |
11 |
ttattctgtgagatttggaatgacctttgtagattacaagaatggtttgaaaagatacgagaaactttctgcattgtggttcaagaattttctc |
104 |
Q |
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| T |
25167393 |
ttatactgtgagatttggaatgacattcgtagattacaaaaatggtttgaaaagatatcaaaagctctcgggattgtggttccagaattttctc |
25167300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 30363107 - 30363156
Alignment:
| Q |
18 |
gtgagatttggaatgacctttgtagattacaagaatggtttgaaaagata |
67 |
Q |
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| T |
30363107 |
gtgaggtttggaatgaactttgtagattacaacaatgacttgaaaagata |
30363156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 110
Target Start/End: Original strand, 42292576 - 42292664
Alignment:
| Q |
22 |
gatttggaatgacctttgtagattacaagaatggtttgaaaagatacgagaaactttctgcattgtggttcaagaattttctcaaaaaa |
110 |
Q |
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||||||| |||| ||||| |||||||| ||||||||||||||| || | || | || ||| ||||||| | |||||||||||||||| |
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| T |
42292576 |
gatttggcatgaattttgtggattacaaaaatggtttgaaaagacaccaaaagttgtcggcaatgtggtttacgaattttctcaaaaaa |
42292664 |
T |
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