View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10151A_low_127 (Length: 269)

Name: NF10151A_low_127
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10151A_low_127
NF10151A_low_127
[»] chr7 (2 HSPs)
chr7 (91-249)||(35442988-35443146)
chr7 (15-93)||(35443205-35443285)
[»] chr8 (1 HSPs)
chr8 (215-244)||(16780329-16780358)


Alignment Details
Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 91 - 249
Target Start/End: Complemental strand, 35443146 - 35442988
Alignment:
Q  91 tgtatatttgtatagattgcatttcttctcgtggttttatgcagttggaaattttgtatagaatgaggttttattttttgattagtaaatagtagatagg 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35443146 tgtatatttgtatagattgcatttcttctcgtggttttatgcagttggaaattttgtatagaatgaggttttattttttgattagtaaatagtagatagg 35443047  T
Q  191 gtttgtttggttacaaaatgctaaaaatacatatatttatgtaaaataagtggttaaat 249  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  35443046 gtttgtttggttacaaaatgctaaaaatacatatatttatttaaaataagtggttaaat 35442988  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 35443285 - 35443205
Alignment:
Q  15 cactcattgttgatttagaatagaattttgcgaaaataaacaaa-gaatcccctttgttcttt-cccttttttatgtttgt 93  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| || ||||||||||||||    
T  35443285 cactcattgttgatttagaatagaattttgcgaaaataaacaaaggaatcacctttgttctttacctttttttatgtttgt 35443205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 244
Target Start/End: Original strand, 16780329 - 16780358
Alignment:
Q  215 aaatacatatatttatgtaaaataagtggt 244  Q
    ||||||||||||||||||||||||||||||    
T  16780329 aaatacatatatttatgtaaaataagtggt 16780358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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