View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151A_low_128 (Length: 268)
Name: NF10151A_low_128
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_low_128 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 12 - 248
Target Start/End: Complemental strand, 3642395 - 3642159
Alignment:
| Q |
12 |
atgaagctgctaactttatgatcgtctcaagattcatttgttgtctcaaattttaaagtattgactgccagagaagtttcaacaaggaaaatcggaacca |
111 |
Q |
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| T |
3642395 |
atgaagctgctaactttatgatcgtctcaagattcatttgttgtctcaaattttaaagtattgactgccggagaagtttcaacaaggaaaatcggaacca |
3642296 |
T |
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| Q |
112 |
ttgtctagtgtagcatttgttcatctaatttcagctgccttggttagtttattcgcatcaatatcctggtcatgttaactttggcactgatgatattctt |
211 |
Q |
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| T |
3642295 |
ttgtctagtgtagcatttgttcatctaatttcagctgccttggttagtttattcgcatcaatatcctggtcatgttaactttggcactgatgatattctt |
3642196 |
T |
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| Q |
212 |
gaatgaattgtcattgacgacttgtataacaattatg |
248 |
Q |
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| T |
3642195 |
gaatgaattgtcattgacgacttgtataacaattatg |
3642159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 9806860 - 9806801
Alignment:
| Q |
12 |
atgaagctgctaactttatgatcgtctcaagattcatttgttgtctcaaattttaaagta |
71 |
Q |
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| T |
9806860 |
atgaagctgttaaccttatgattatctcaagattcatttgttgtctcaaattataaagta |
9806801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 204
Target Start/End: Original strand, 10606872 - 10606935
Alignment:
| Q |
141 |
ttcagctgccttggttagtttattcgcatcaatatcctggtcatgttaactttggcactgatga |
204 |
Q |
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| T |
10606872 |
ttcagctgccttgtttagtttattccaattaatatccaggtccttttaactctggcactgatga |
10606935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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