View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151A_low_129 (Length: 268)
Name: NF10151A_low_129
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_low_129 |
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Alignment Details
Target: chr2 (Bit Score: 118; Significance: 3e-60; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 35936723 - 35936856
Alignment:
| Q |
1 |
ggtggtagattatactggaatgcttgatttttgtgagtggggttgaatgttcagtgttggagactgttttctgatttctaaatgtttgatggatactgtt |
100 |
Q |
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| T |
35936723 |
ggtgttaggttattctggaatgcttgatttttgtgagtggggttgaatgttcagtgttggagactgtgttctgatttctaaatgtttgatggatactgtt |
35936822 |
T |
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| Q |
101 |
ttctcatttctaaatgtttgaattcgaagtgtgg |
134 |
Q |
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| T |
35936823 |
ttctcatttctaaatgtttgaattcgaagtgtgg |
35936856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 186 - 268
Target Start/End: Original strand, 35936908 - 35936990
Alignment:
| Q |
186 |
cagtggagtcgaatgttcggttttggatgttgttttctctgattcttaaatgtttgaatttgaagtgtggttgatttttatga |
268 |
Q |
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| T |
35936908 |
cagtggagtcgagtgttcggttttggatgttgttttctctgattcttaaatgtttgaatttgaagtgtggttgattttgatga |
35936990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 268
Target Start/End: Original strand, 35936833 - 35936869
Alignment:
| Q |
232 |
taaatgtttgaatttgaagtgtggttgatttttatga |
268 |
Q |
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| T |
35936833 |
taaatgtttgaattcgaagtgtggttgattttgatga |
35936869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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