View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10151A_low_131 (Length: 267)

Name: NF10151A_low_131
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10151A_low_131
NF10151A_low_131
[»] chr1 (1 HSPs)
chr1 (6-261)||(36314413-36314671)
[»] chr8 (21 HSPs)
chr8 (54-178)||(19345334-19345458)
chr8 (54-178)||(19503885-19504009)
chr8 (54-166)||(19337681-19337793)
chr8 (54-153)||(19355714-19355813)
chr8 (54-177)||(19468410-19468533)
chr8 (54-177)||(19555331-19555454)
chr8 (51-165)||(19410958-19411072)
chr8 (51-165)||(19457977-19458091)
chr8 (51-165)||(19522987-19523101)
chr8 (72-177)||(19404923-19405028)
chr8 (74-171)||(19376801-19376898)
chr8 (54-165)||(19592308-19592416)
chr8 (51-165)||(19469355-19469466)
chr8 (51-165)||(19540279-19540390)
chr8 (80-256)||(19390685-19390864)
chr8 (80-162)||(19172660-19172742)
chr8 (67-165)||(19287901-19287999)
chr8 (96-143)||(19371145-19371192)
chr8 (205-256)||(19410882-19410933)
chr8 (205-256)||(19457901-19457952)
chr8 (205-256)||(19523126-19523177)
[»] chr6 (1 HSPs)
chr6 (81-177)||(19543241-19543337)


Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 6 - 261
Target Start/End: Original strand, 36314413 - 36314671
Alignment:
Q  6 aaccataaattacattccattcatatgatgatgcattgtccattttgctt---ggtgttcccacctttttctgaaaaacctcaccaggttccctacaagt 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  36314413 aaccataaattacattccattcatatgatgatgcattgtccattttgctttttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagt 36314512  T
Q  103 tggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgcatttccaatttctccactagcattgtcttcatcaccactt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  36314513 tggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgcatttccaatttctccactagcattgtcttcaacaccactt 36314612  T
Q  203 gttaacttgcccttcgaggatagctcccatcgtataaacttcccatctttaactccaaa 261  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  36314613 gttaacttgcccttcgaggatagctcccatcatataaacttcccatctttaacttcaaa 36314671  T

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Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 54 - 178
Target Start/End: Complemental strand, 19345458 - 19345334
Alignment:
Q  54 ttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataaca 153  Q
    |||||||||||||| ||||||||||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19345458 ttggtgttcccaccattttctgaaaaacctcaccattttccctacaatttggtatttcctcccatttttggcaccctccattgctattatatccataaca 19345359  T
Q  154 tatatctgcatttccaatttctcca 178  Q
     ||||||||||| ||||| ||||||    
T  19345358 catatctgcattcccaatatctcca 19345334  T

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Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 54 - 178
Target Start/End: Original strand, 19503885 - 19504009
Alignment:
Q  54 ttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataaca 153  Q
    ||||||||||| |  ||||||||||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19503885 ttggtgttcccgcaattttctgaaaaacctcaccattttccctacaatttggtatttcctcccatttttggcaccctccattgctattatatccataaca 19503984  T
Q  154 tatatctgcatttccaatttctcca 178  Q
     ||||||||||| ||||| ||||||    
T  19503985 catatctgcattcccaatctctcca 19504009  T

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Target: chr8; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 54 - 166
Target Start/End: Complemental strand, 19337793 - 19337681
Alignment:
Q  54 ttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataaca 153  Q
    ||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  19337793 ttggtcttcccaccattttccgaaaaacctcaccaggttccctacaatttggtatttcctcccatttttggcaccctccatcgctattatatccataaca 19337694  T
Q  154 tatatctgcattt 166  Q
     || |||||||||    
T  19337693 catgtctgcattt 19337681  T

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Target: chr8; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 54 - 153
Target Start/End: Complemental strand, 19355813 - 19355714
Alignment:
Q  54 ttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataaca 153  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  19355813 ttggtcttcccacctttttccgaaaaacctcaccaggttccctacaatttggtatttcctcccatttttggcaccctccatcgctattatatccataaca 19355714  T

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Target: chr8; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 54 - 177
Target Start/End: Original strand, 19468410 - 19468533
Alignment:
Q  54 ttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataaca 153  Q
    ||||| ||||| |||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||    
T  19468410 ttggtcttcccgcctttttctgaaacccctcaccaggtgccctacaagttggtatatcctcccatttttggcatcctccatcactattatatccataaca 19468509  T
Q  154 tatatctgcatttccaatttctcc 177  Q
     |||||||||||| |||| |||||    
T  19468510 catatctgcatttacaatatctcc 19468533  T

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Target: chr8; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 54 - 177
Target Start/End: Original strand, 19555331 - 19555454
Alignment:
Q  54 ttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataaca 153  Q
    ||||| ||||| |||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||    
T  19555331 ttggtcttcccgcctttttctgaaacccctcaccaggtgccctacaagttggtatatcctcccatttttggcatcctccatcactattatatccataaca 19555430  T
Q  154 tatatctgcatttccaatttctcc 177  Q
     |||||||||||| |||| |||||    
T  19555431 catatctgcatttacaatatctcc 19555454  T

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Target: chr8; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 51 - 165
Target Start/End: Complemental strand, 19411072 - 19410958
Alignment:
Q  51 tgcttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccata 150  Q
    |||||||| ||||| ||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||| ||    
T  19411072 tgcttggtcttcccgcctttttctgaaacatctcaccaggttccctgcaagttggtatatcctcccatttttggcaccctccatcactattatatccgta 19410973  T
Q  151 acatatatctgcatt 165  Q
    ||| |||||||||||    
T  19410972 acacatatctgcatt 19410958  T

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Target: chr8; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 51 - 165
Target Start/End: Complemental strand, 19458091 - 19457977
Alignment:
Q  51 tgcttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccata 150  Q
    |||||||| ||||| ||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||| ||    
T  19458091 tgcttggtcttcccgcctttttctgaaacatctcaccaggttccctgcaagttggtatatcctcccatttttggcaccctccatcactattatatccgta 19457992  T
Q  151 acatatatctgcatt 165  Q
    ||| |||||||||||    
T  19457991 acacatatctgcatt 19457977  T

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Target: chr8; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 51 - 165
Target Start/End: Original strand, 19522987 - 19523101
Alignment:
Q  51 tgcttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccata 150  Q
    |||||||| ||||| ||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||| ||    
T  19522987 tgcttggtcttcccgcctttttctgaaacatctcaccaggttccctgcaagttggtatatcctcccatttttggcaccctccatcactattatatccgta 19523086  T
Q  151 acatatatctgcatt 165  Q
    ||| |||||||||||    
T  19523087 acacatatctgcatt 19523101  T

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Target: chr8; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 72 - 177
Target Start/End: Complemental strand, 19405028 - 19404923
Alignment:
Q  72 tctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgcatttccaat 171  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |  ||||||||||||||||| |||||||||||||||||    
T  19405028 tctgaaacacctcaccaggttccctacaagttggtatatcctcccacttttggcaccctccgtccctattatatccataacacatatctgcatttccaat 19404929  T
Q  172 ttctcc 177  Q
     |||||    
T  19404928 atctcc 19404923  T

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Target: chr8; HSP #11
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 74 - 171
Target Start/End: Complemental strand, 19376898 - 19376801
Alignment:
Q  74 tgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgcatttccaat 171  Q
    ||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||    
T  19376898 tgaaacacctcaccaggttccctgcaagctggtatatcctcccatttttggcaccctcgatcactattatatccataacatatatctgcatttccaat 19376801  T

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Target: chr8; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 54 - 165
Target Start/End: Complemental strand, 19592416 - 19592308
Alignment:
Q  54 ttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataaca 153  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    | ||||||| |||||    
T  19592416 ttggtgttcccgcctttttctgaaaaacctcaccaggttccctgcaagttggtatatcctcccatttttggcatcctccat---cactatatccgtaaca 19592320  T
Q  154 tatatctgcatt 165  Q
     |||||||||||    
T  19592319 catatctgcatt 19592308  T

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Target: chr8; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 51 - 165
Target Start/End: Original strand, 19469355 - 19469466
Alignment:
Q  51 tgcttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccata 150  Q
    |||||||| ||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    | ||||||| ||    
T  19469355 tgcttggtcttcccgcctttttctgaaacacctcaccaggttccctgcaagttggtatatcctcccatttttggcatcctccat---cactatatccgta 19469451  T
Q  151 acatatatctgcatt 165  Q
    ||| |||||||||||    
T  19469452 acacatatctgcatt 19469466  T

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Target: chr8; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 51 - 165
Target Start/End: Original strand, 19540279 - 19540390
Alignment:
Q  51 tgcttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccata 150  Q
    |||||||| ||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    | ||||||| ||    
T  19540279 tgcttggtcttcccgcctttttctgaaacacctcaccaggttccctgcaagttggtatatcctcccatttttggcatcctccat---cactatatccgta 19540375  T
Q  151 acatatatctgcatt 165  Q
    ||| |||||||||||    
T  19540376 acacatatctgcatt 19540390  T

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Target: chr8; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 80 - 256
Target Start/End: Complemental strand, 19390864 - 19390685
Alignment:
Q  80 acctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgcatttccaatttctccac 179  Q
    ||||||| ||| ||||| ||||||||||||||||||||||||||||||||  |||  |||||||||||||||||  ||||||||||  |||| ||| |||    
T  19390864 acctcacgagggtccctgcaagttggtatatcctcccatttttggcacccggcatcactattatatccataacacttatctgcattagcaatgtctgcac 19390765  T
Q  180 tagcattgtct---tcatcaccacttgttaacttgcccttcgaggatagctcccatcgtataaacttcccatctttaact 256  Q
    ||  | | |||   |||||| ||||| ||||| | ||||||||||  |    ||||||||||||||||||||||||||||    
T  19390764 tataaatctctccctcatcagcacttattaacctccccttcgaggtaatgaaccatcgtataaacttcccatctttaact 19390685  T

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Target: chr8; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 80 - 162
Target Start/End: Original strand, 19172660 - 19172742
Alignment:
Q  80 acctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgc 162  Q
    |||||||| |||||||| || |||||||||||||||||||||||||||||||||| | ||||||| |||||||| ||||||||    
T  19172660 acctcaccgggttccctgcaggttggtatatcctcccatttttggcaccctccatcggtattatagccataacacatatctgc 19172742  T

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Target: chr8; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 67 - 165
Target Start/End: Complemental strand, 19287999 - 19287901
Alignment:
Q  67 ctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgcatt 165  Q
    |||||| ||||| ||||||||| ||||||| |||||||| |||||||||||||||||||||||| |||   ||||||||||||||||  ||||||||||    
T  19287999 ctttttttgaaagacctcaccacgttccctgcaagttggcatatcctcccatttttggcacccttcatcattattatatccataacacttatctgcatt 19287901  T

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Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 96 - 143
Target Start/End: Complemental strand, 19371192 - 19371145
Alignment:
Q  96 tacaagttggtatatcctcccatttttggcaccctccattgctattat 143  Q
    ||||||||||||||| ||||||||||||||| || ||||| |||||||    
T  19371192 tacaagttggtatatactcccatttttggcatccaccattactattat 19371145  T

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Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 256
Target Start/End: Complemental strand, 19410933 - 19410882
Alignment:
Q  205 taacttgcccttcgaggatagctcccatcgtataaacttcccatctttaact 256  Q
    |||||| |||||||||||||| |||||| ||  |||||||||||||||||||    
T  19410933 taacttccccttcgaggatagttcccattgtgcaaacttcccatctttaact 19410882  T

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Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 256
Target Start/End: Complemental strand, 19457952 - 19457901
Alignment:
Q  205 taacttgcccttcgaggatagctcccatcgtataaacttcccatctttaact 256  Q
    |||||| |||||||||||||| |||||| ||  |||||||||||||||||||    
T  19457952 taacttccccttcgaggatagttcccattgtgcaaacttcccatctttaact 19457901  T

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Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 256
Target Start/End: Original strand, 19523126 - 19523177
Alignment:
Q  205 taacttgcccttcgaggatagctcccatcgtataaacttcccatctttaact 256  Q
    |||||| |||||||||||||| |||||| ||  |||||||||||||||||||    
T  19523126 taacttccccttcgaggatagttcccattgtgcaaacttcccatctttaact 19523177  T

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Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 81 - 177
Target Start/End: Complemental strand, 19543337 - 19543241
Alignment:
Q  81 cctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgcatttccaatttctcc 177  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||| |  |||||||||||||| |||||    
T  19543337 cctcaccaggttccctacaacttggtatatcctcccatttttggcaccctccgttgatattatatccataacacaagtctgcatttccaatatctcc 19543241  T

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