View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151A_low_135 (Length: 264)
Name: NF10151A_low_135
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_low_135 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 12 - 258
Target Start/End: Original strand, 14865140 - 14865386
Alignment:
| Q |
12 |
agagtctcgaaaagcacggagatgatgtaaatttcgccatttacagagacaagaacttcaccaactacggaacggatcgacccggtggatttgactcgtt |
111 |
Q |
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| T |
14865140 |
agagtctcgaaaagcacggagatgatgtaaatttcgccatttacagagacaagaacttcaccaactacggaacggatcgacccggtggatttgactcgtt |
14865239 |
T |
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| Q |
112 |
caaaaactactccgacggtgaaaacgttctggtgaacgattttcgtcgctacagccgaaactccgccggccataaagaaaccttcaccagctacgctaca |
211 |
Q |
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| T |
14865240 |
caaaaactactccgacggtgaaaacgttctggtgaacgatttccgtcgctacagccgaaactccgccggccataaagaaaccttcaccagctacgctacc |
14865339 |
T |
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| Q |
212 |
aacgccaacgtcgccgatcaaagcttccacacttacggcgccggagc |
258 |
Q |
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| T |
14865340 |
aacgccaacgtcgccgatcaaagcttccacacttacggcgccggagc |
14865386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 258
Target Start/End: Original strand, 55977459 - 55977713
Alignment:
| Q |
12 |
agagtctcgaaaagcacggagatgatgtaaatttcgccatttacagagacaagaacttcaccaactacggaacggatcgacccggtggatttgactcgtt |
111 |
Q |
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| T |
55977459 |
agagtcttgaaaagcacgaaggtgatgaaaatttcaaggcttacagcgataagaatttcaccaactacggaacgagtctacccggtggacacgactcgtt |
55977558 |
T |
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| Q |
112 |
caaaaactactccgacggtgaaaacgttctg--------gtgaacgattttcgtcgctacagccgaaactccgccggccataaagaaaccttcaccagct |
203 |
Q |
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| T |
55977559 |
caaaaactactcggacggagactac--tctgacggagaggtgaatgatttctgtcgctacagccgaaactctgccggccataaagaaactttcaccaact |
55977656 |
T |
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| Q |
204 |
--acgctacaaacgccaacgtcgccgatcaaagcttccacacttacggcgccggagc |
258 |
Q |
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|||| ||||||||||||||||| ||||||||||| |||||||||||||| ||||| |
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| T |
55977657 |
acacgccacaaacgccaacgtcgctgatcaaagctttcacacttacggcgctggagc |
55977713 |
T |
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