View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10151A_low_143 (Length: 255)

Name: NF10151A_low_143

Description: NF10151A

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF10151A_low_143

[»] chr2 (2 HSPs)

Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 2)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 227; E-Value: 1e-125

Query Start/End: Original strand, 5 - 243

Target Start/End: Original strand, 32124760 - 32124998

Alignment:

Q	5	caataaatactaaaaattcaatataagtgagggaaattgtcgagggtctctctataatatgcacacttttaaaaaagggttaaacctggaattccaattt	104	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	32124760	caataaatgctaaaaattcaatataagtgagggaaattatcgagggtctctctataatatgcacacttttaaaaaaggattaaacctggaattccaattt	32124859	T

Q	105	tacctgttgtagtcaattttacttgtttttaacattcatctttttattttacgtggtgaagttctcttttcctcttgcagctaaacacattgtcacacgc	204	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	32124860	tacctgttgtagtcaattttacttgtttttaacattcatctttttattttacgtggtgaagttctcttttcctcttgcagctaaacacattgtcacacgc	32124959	T

Q	205	atttattcccttattcccgctctaaatgaagaacatatt	243	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	32124960	atttattcccttattcccgctctaaatgaagaacatatt	32124998	T

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Target: chr2; HSP #2

Raw Score: 31; E-Value: 0.00000002

Query Start/End: Original strand, 6 - 83

Target Start/End: Original strand, 32150109 - 32150184

Alignment:

Q	6	aataaatactaaaaattcaatataagtgagggaaattgtcgagggtctctctataatatgcacacttttaaaaaaggg	83	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	32150109	aataaatgttaaaaattcactataagtgaaggaaattatgtagggtctctc--taataggcacacttttataaaaggg	32150184	T

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