View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151A_low_144 (Length: 255)
Name: NF10151A_low_144
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_low_144 |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 2619817 - 2619584
Alignment:
| Q |
1 |
acatttgataaaccagctcctaaagccctgccacataagaaaaaatatataattaacaactttgtagcaccgacacgtctgattgaagatgtgtccagtg |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||| |
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| T |
2619817 |
acatttgatagaccagctcctaaagccctgccacataggaaaaaatatataattaacaactttgtagcatcgacacttctgattgaaggcgtgtccagtg |
2619718 |
T |
|
| Q |
101 |
tttgtcatgtgtcagtgtcgtcgacacatgtgattacatgaaaatgattcattttctctcaaattgatacatgtgtcatcgatctgtctgtgttagtttc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2619717 |
tttgtcatgtgtcagtgtcgtcgacacatgtgattacattaaaatgattcattttctctcaaattgatacatgtgtcattgatctgtctgtgttagtttc |
2619618 |
T |
|
| Q |
201 |
atgacagtgtttgtacttaacaaattaacaaaaa |
234 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
2619617 |
atgacagtgtttgtacttaacaaattaacaaaaa |
2619584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 2586127 - 2585914
Alignment:
| Q |
1 |
acatttgataaaccagctcctaaagccctgccacataagaaaaa-atatataattaacaactttgtagcaccgacacgtctgattgaagatgtgtccagt |
99 |
Q |
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|||||||| | ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||| ||||||| | | |||||||||| |
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| T |
2586127 |
acatttgacataccagctcctaaagccctgccacataagaaaaatatatataatcaacaactttgtagaaccgacacttctgattaatggtgtgtccagt |
2586028 |
T |
|
| Q |
100 |
gtttgtcatgtgtcagtgt---cgtcgacacatgtgattacatgaaaatgattcattttctctcaaattgatacatgtgtcatcgatctgtctgtgttag |
196 |
Q |
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| T |
2586027 |
gtctgttacgtgtcactgtctacgctgacacatgtgattactttaaaatgattcattt--tctcaaattgat-tatgtgt-gtcgatttgtctgtgttat |
2585932 |
T |
|
| Q |
197 |
tttcatgacagtgtttgt |
214 |
Q |
| |
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|||| || ||||||||| |
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| T |
2585931 |
tttcgtgtaagtgtttgt |
2585914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 2677767 - 2677842
Alignment:
| Q |
1 |
acatttgataaaccagctcctaaagccctgccacataagaaaaaa-tatataattaacaactttgtagcaccgaca |
75 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| | ||||| ||||| |
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| T |
2677767 |
acatttgataaaccagctcctaaagccctaccacataagaaaaaattatataattaacaactatttagcaacgaca |
2677842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 2645329 - 2645403
Alignment:
| Q |
1 |
acatttgataaaccagctcctaaagccctgccacataagaaaaaatatataattaacaactttgtagcaccgaca |
75 |
Q |
| |
|
|||||||||||| |||||||||||| |||| |||||||| |||||||||||||||||||| || || |||||||| |
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| T |
2645329 |
acatttgataaaacagctcctaaagtcctgtcacataaggaaaaatatataattaacaacattataacaccgaca |
2645403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 95
Target Start/End: Complemental strand, 36398559 - 36398525
Alignment:
| Q |
61 |
tttgtagcaccgacacgtctgattgaagatgtgtc |
95 |
Q |
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| T |
36398559 |
tttgtagcaccgacacttctgattgaagatgtgtc |
36398525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 8203940 - 8203892
Alignment:
| Q |
67 |
gcaccgacacgtctgattgaagatgtgtccagtgtttgtcatgtgtcag |
115 |
Q |
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|||| ||||| ||||| |||| |||||||||||||||||||||||||| |
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| T |
8203940 |
gcactgacacttctgacagaaggtgtgtccagtgtttgtcatgtgtcag |
8203892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 119
Target Start/End: Complemental strand, 16771345 - 16771289
Alignment:
| Q |
63 |
tgtagcaccgacacgtctgattgaagatgtgtccagtgtttgtcatgtgtcagtgtc |
119 |
Q |
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||||||| |||||| ||||||||||| ||||||||||||| |||||||| ||||| |
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| T |
16771345 |
tgtagcatcgacacttctgattgaaggtgtgtccagtgttcaacatgtgtctgtgtc |
16771289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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