View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151A_low_149 (Length: 253)
Name: NF10151A_low_149
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_low_149 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 14 - 253
Target Start/End: Complemental strand, 3642664 - 3642425
Alignment:
| Q |
14 |
agaggtatggtttagtgccagaaagagagcgttatgattcacggttgatcttttgattcgggcaggtaatttccaagagacggaaaaactaatgaagaca |
113 |
Q |
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| T |
3642664 |
agaggtatggtatagtgccagaaagagagcgttatgattcacggttgatcttttgattcgggcaggtaatttccaagagacggaaaaactaatgaagaca |
3642565 |
T |
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| Q |
114 |
atgtcaataaaaccaaatattgccatattcggtgctcttttaaatggtttccagattcatgaaaacgtctatgttgctagtcaggtgaaagtacgactaa |
213 |
Q |
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| T |
3642564 |
atgtcaataaaaccaaatattgccatattcggtgctcttttaaatggtttccagattcatgaaaacgtctatgttgctagtcaagtgaaagtacgactaa |
3642465 |
T |
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| Q |
214 |
ccaagctgaaaccttttcaaaatgaagaataaaaggattg |
253 |
Q |
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| T |
3642464 |
ccaagctgaaaccttttcaaaatgaagcataaaaggattg |
3642425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 56 - 234
Target Start/End: Complemental strand, 9807164 - 9806986
Alignment:
| Q |
56 |
ggttgatcttttgattcgggcaggtaatttccaagagacggaaaaactaatgaagacaatgtcaataaaaccaaatattgccatattcggtgctctttta |
155 |
Q |
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| T |
9807164 |
ggttgatcttttgagtcgggcaggtcattttagagaggcggaaaaactaatggagacaatgtcaatacgaccaaatattgccatatggggtgctctttta |
9807065 |
T |
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| Q |
156 |
aatggtttccagattcatgaaaacgtctatgttgctagtcaggtgaaagtacgactaaccaagctgaaaccttttcaaa |
234 |
Q |
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| T |
9807064 |
aatggttgccagattcatgaaaacatccctgttgctagtcaagtgaaagtacgattagcagagctggaacctattcaaa |
9806986 |
T |
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