View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10151A_low_150 (Length: 253)

Name: NF10151A_low_150
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10151A_low_150
NF10151A_low_150
[»] chr2 (4 HSPs)
chr2 (47-241)||(43777256-43777452)
chr2 (108-190)||(2995839-2995920)
chr2 (118-167)||(20625300-20625349)
chr2 (108-181)||(23914731-23914804)
[»] chr1 (4 HSPs)
chr1 (108-184)||(42561686-42561762)
chr1 (108-183)||(42560996-42561071)
chr1 (121-167)||(34969385-34969431)
chr1 (90-167)||(40368038-40368115)
[»] chr4 (4 HSPs)
chr4 (121-167)||(32547389-32547435)
chr4 (121-167)||(2133521-2133567)
chr4 (108-190)||(17982095-17982176)
chr4 (121-167)||(18419292-18419338)
[»] chr8 (3 HSPs)
chr8 (120-185)||(7718313-7718378)
chr8 (117-182)||(13765852-13765917)
chr8 (148-188)||(14537999-14538039)
[»] chr5 (3 HSPs)
chr5 (95-184)||(3955872-3955961)
chr5 (108-181)||(27175125-27175198)
chr5 (121-167)||(42027689-42027735)
[»] chr3 (1 HSPs)
chr3 (110-179)||(49758125-49758194)
[»] scaffold0009 (1 HSPs)
scaffold0009 (108-167)||(53670-53729)
[»] chr7 (1 HSPs)
chr7 (108-180)||(24650234-24650306)


Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 47 - 241
Target Start/End: Original strand, 43777256 - 43777452
Alignment:
Q  47 aagaaaacttggatctatttagctactatatgtgacgttaacg--tatctttttcaactagagcaacaatatatcattattatagaaaagattgttaaag 144  Q
    ||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43777256 aagaaaacttggatctatttagctactatatgtgacgttaactcttatctttttcaactagagcaacaatatatcattattatagaaaagattgttaaag 43777355  T
Q  145 agaataattgaaataatgaaaaatctagcccaaaatctctcattcctcatgcatattgttttgttaaagactcttatatattgttatagataatatt 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  43777356 agaataattgaaataatgaaaaatctagcccaaaatctctcattcctcatgtatattgttttgttaaagactcttatatattgttatagataatatt 43777452  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 190
Target Start/End: Complemental strand, 2995920 - 2995839
Alignment:
Q  108 caacaatatatcattattatagaaaagattgttaaagagaataattgaaataatgaaaaatctagcccaaaatctctcattcc 190  Q
    |||||||||||||||| |||||||||  ||||| ||| |  |||||| ||||||||||||| |||  |||||| |||||||||    
T  2995920 caacaatatatcattactatagaaaattttgtttaag-gtgtaattggaataatgaaaaatgtaggtcaaaatatctcattcc 2995839  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 167
Target Start/End: Complemental strand, 20625349 - 20625300
Alignment:
Q  118 tcattattatagaaaagattgttaaagagaataattgaaataatgaaaaa 167  Q
    |||||||||||||||| ||||||  |||| |||||||| |||||||||||    
T  20625349 tcattattatagaaaaaattgttttagagtataattgagataatgaaaaa 20625300  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 181
Target Start/End: Complemental strand, 23914804 - 23914731
Alignment:
Q  108 caacaatatatcattattatagaaaagattgttaaagagaataattgaaataatgaaaaatctagcccaaaatc 181  Q
    |||||||||| |||| ||||||  ||  ||||| ||||| ||||||| |||||||||||||| || ||||||||    
T  23914804 caacaatataacattcttataggcaaatttgtttaagagtataattggaataatgaaaaatccagtccaaaatc 23914731  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 108 - 184
Target Start/End: Original strand, 42561686 - 42561762
Alignment:
Q  108 caacaatatatcattattatagaaaagattgttaaagagaataattgaaataatgaaaaatctagcccaaaatctct 184  Q
    |||||||||| |||| ||||||||||  ||||| ||| ||||||||| ||||||||||||   ||||||||||||||    
T  42561686 caacaatataacattgttatagaaaaatttgttgaagggaataattggaataatgaaaaagtcagcccaaaatctct 42561762  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 183
Target Start/End: Original strand, 42560996 - 42561071
Alignment:
Q  108 caacaatatatcattattatagaaaagattgttaaagagaataattgaaataatgaaaaatctagcccaaaatctc 183  Q
    |||||||||| |||||||||||||||  ||||| ||| | ||||||| |||||||||||||| |  ||||||||||    
T  42560996 caacaatataacattattatagaaaaatttgtttaagggtataattggaataatgaaaaatccaatccaaaatctc 42561071  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 167
Target Start/End: Original strand, 34969385 - 34969431
Alignment:
Q  121 ttattatagaaaagattgttaaagagaataattgaaataatgaaaaa 167  Q
    ||||||||||||| |||||| ||||| ||||||| ||||||||||||    
T  34969385 ttattatagaaaaaattgtttaagagtataattggaataatgaaaaa 34969431  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 167
Target Start/End: Complemental strand, 40368115 - 40368038
Alignment:
Q  90 tatctttttcaactagagcaacaatatatcattattatagaaaagattgttaaagagaataattgaaataatgaaaaa 167  Q
    ||||||||||||  | | |||||||||| ||||| |||||||||  ||||| ||| | ||||||| ||||||||||||    
T  40368115 tatctttttcaatgacaccaacaatataacattaatatagaaaaatttgtttaagggtataattggaataatgaaaaa 40368038  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 167
Target Start/End: Original strand, 32547389 - 32547435
Alignment:
Q  121 ttattatagaaaagattgttaaagagaataattgaaataatgaaaaa 167  Q
    ||||||||||||| |||||| ||||| ||||||||||||||||||||    
T  32547389 ttattatagaaaaaattgtttaagagtataattgaaataatgaaaaa 32547435  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 167
Target Start/End: Complemental strand, 2133567 - 2133521
Alignment:
Q  121 ttattatagaaaagattgttaaagagaataattgaaataatgaaaaa 167  Q
    ||||||||||||| |||||| ||||| |||||||| |||||||||||    
T  2133567 ttattatagaaaaaattgtttaagagtataattgagataatgaaaaa 2133521  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 190
Target Start/End: Complemental strand, 17982176 - 17982095
Alignment:
Q  108 caacaatatatcattattatagaaaagattgttaaagagaataattgaaataatgaaaaatctagcccaaaatctctcattcc 190  Q
    |||||||||||||||| |||||||||  ||||| ||| |  |||||| ||||||||||||| |||  |||||| |||||||||    
T  17982176 caacaatatatcattactatagaaaattttgtttaag-gtgtaattggaataatgaaaaatgtaggtcaaaatatctcattcc 17982095  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 167
Target Start/End: Complemental strand, 18419338 - 18419292
Alignment:
Q  121 ttattatagaaaagattgttaaagagaataattgaaataatgaaaaa 167  Q
    ||||||||||||| |||||| ||| | ||||||||||||||||||||    
T  18419338 ttattatagaaaaaattgttcaagggtataattgaaataatgaaaaa 18419292  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 7718313 - 7718378
Alignment:
Q  120 attattatagaaaagattgttaaagagaataattgaaataatgaaaaatctagcccaaaatctctc 185  Q
    ||||||||||||||| ||||| |||   ||||||  ||||||||||||||||| ||||||||||||    
T  7718313 attattatagaaaagtttgttcaaggatataattagaataatgaaaaatctagtccaaaatctctc 7718378  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 182
Target Start/End: Complemental strand, 13765917 - 13765852
Alignment:
Q  117 atcattattatagaaaagattgttaaagagaataattgaaataatgaaaaatctagcccaaaatct 182  Q
    ||||||||||||||||| ||||||  |||| |||||| | ||||||||||||  ||||||||||||    
T  13765917 atcattattatagaaaaaattgttttagagtataatttagataatgaaaaattcagcccaaaatct 13765852  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 14538039 - 14537999
Alignment:
Q  148 ataattgaaataatgaaaaatctagcccaaaatctctcatt 188  Q
    |||||||||||||| |||||| |||||||||||||||||||    
T  14538039 ataattgaaataataaaaaatatagcccaaaatctctcatt 14537999  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 184
Target Start/End: Original strand, 3955872 - 3955961
Alignment:
Q  95 ttttcaactagagcaacaatatatcattattatagaaaagattgttaaagagaataattgaaataatgaaaaatctagcccaaaatctct 184  Q
    |||||||| | | ||||||||||||||||||| ||||||  ||||| ||  | | ||||| |||||||||||||| | ||||||||||||    
T  3955872 ttttcaacgacatcaacaatatatcattattaaagaaaaatttgtttaaaggtacaattggaataatgaaaaatccaacccaaaatctct 3955961  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 181
Target Start/End: Complemental strand, 27175198 - 27175125
Alignment:
Q  108 caacaatatatcattattatagaaaagattgttaaagagaataattgaaataatgaaaaatctagcccaaaatc 181  Q
    |||||||||| ||||||||||||||| |||||| ||  | ||||||| |||||  ||||||| |||||||||||    
T  27175198 caacaatataacattattatagaaaacattgtttaatggtataattggaataacaaaaaatccagcccaaaatc 27175125  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 167
Target Start/End: Original strand, 42027689 - 42027735
Alignment:
Q  121 ttattatagaaaagattgttaaagagaataattgaaataatgaaaaa 167  Q
    ||||||||||||| |||||| ||||| |||||||| |||||||||||    
T  42027689 ttattatagaaaaaattgtttaagagtataattgagataatgaaaaa 42027735  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 49758125 - 49758194
Alignment:
Q  110 acaatatatcattattatagaaaagattgttaaagagaataattgaaataatgaaaaatctagcccaaaa 179  Q
    ||||||||  |||||||||||||| |||||| ||| | |||||||||||||| ||||||| | |||||||    
T  49758125 acaatataatattattatagaaaaaattgtttaagggtataattgaaataataaaaaatccaacccaaaa 49758194  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 167
Target Start/End: Complemental strand, 53729 - 53670
Alignment:
Q  108 caacaatatatcattattatagaaaagattg-ttaaagagaataattgaaataatgaaaaa 167  Q
    |||||||||| |||||||||||||||  ||| |||||||  ||||||||||||||||||||    
T  53729 caacaatataacattattatagaaaaatttgtttaaaga-tataattgaaataatgaaaaa 53670  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 180
Target Start/End: Complemental strand, 24650306 - 24650234
Alignment:
Q  108 caacaatatatcattattatagaaaagattgttaaagagaataattgaaataatgaaaaatctagcccaaaat 180  Q
    |||||||||  |||||||| || |||| ||||| ||| |  |||||||||||||||||||| ||||| |||||    
T  24650306 caacaatattgcattattacaggaaagtttgtttaagggtttaattgaaataatgaaaaatgtagcctaaaat 24650234  T

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