View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151A_low_155 (Length: 250)
Name: NF10151A_low_155
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_low_155 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 2341081 - 2341312
Alignment:
| Q |
1 |
gttgtgaaacatgctgctgaagttttcatcttgaatatctggtcttgatgtgaattgaagaagttggggtatgttgtttggatttaatgaagttggtaga |
100 |
Q |
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| T |
2341081 |
gttgtgaaacatgctgctgaagttttcatcttgaatatctggtcttgatgtgaattgaagaagttggggtatgttgtttggatttaatgaagttggtaga |
2341180 |
T |
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| Q |
101 |
aggctaattaggtttctaccattctgtgaagaaatagaactgttcaaagcttgtgttcttgaaagatctaaattaatgtttaagctattatcacttccat |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2341181 |
aggctaattaggtttctaccattctgtgaagaaacagaactgttcaaagcttgtgttcttgagagatctaaattaatgtttaagctattatcacttccat |
2341280 |
T |
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| Q |
201 |
tgctccaagaaccctcagtttctttcattagg |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
2341281 |
tgctccaagaaccctcagtttctttcattagg |
2341312 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 225
Target Start/End: Original strand, 3351957 - 3352029
Alignment:
| Q |
153 |
gtgttcttgaaagatctaaattaatgtttaagctattatcacttccattgctccaagaaccctcagtttcttt |
225 |
Q |
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||||||| ||||| |||| ||| || | | |||| |||||||||||||||||||||||||| ||| ||||||| |
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| T |
3351957 |
gtgttctagaaaggtctagattcatatctgagctgttatcacttccattgctccaagaaccttcattttcttt |
3352029 |
T |
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