View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151A_low_161 (Length: 250)
Name: NF10151A_low_161
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_low_161 |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 3686201 - 3685958
Alignment:
| Q |
1 |
agcaagtaaccactttcttttttcttttctccctaacataactgtcatattttatttcgagtactgctatttatcaagaacacacctcataacgatcttc |
100 |
Q |
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| T |
3686201 |
agcaagtaaccactttcttttttcttttctccctaacataactgtcatattttttttctagtactgctatttatcaagaacacacctcataacgatcttc |
3686102 |
T |
|
| Q |
101 |
ccgaatcgatacgtgtggtaattataaaggaagaagttgtgtatagttcatgaatgagcggaaatcacagtgtgtatgtgttataagaaccaatcactta |
200 |
Q |
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| T |
3686101 |
ccgaatcgatacgtgtggtaattataaaggaagaagttgtgtatagttcatgaatgagcggaaatcacagtgtgtatgtgttaaaagaaccaatcactta |
3686002 |
T |
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| Q |
201 |
ctgccacatcagttcgcgatgcgttcgtgatctatattcttcga |
244 |
Q |
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| T |
3686001 |
ctgccacatcagttcgcgatgcgttcgtgatctatattcttcga |
3685958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 44 - 243
Target Start/End: Complemental strand, 3693925 - 3693725
Alignment:
| Q |
44 |
gtcatattttatttcgagtactgctatttatcaagaacacacctcataacgatcttcccgaatcgatacgtgtggtaattataaaggaagaagttgtgta |
143 |
Q |
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| T |
3693925 |
gtcatattttatttctagtactgttgtttatcaaaaacacacctcatcatgatcttcccgaatcgatacgtgttgtaattataaaggaagaagcagtgta |
3693826 |
T |
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| Q |
144 |
tagttcatgaatgagcggaaatcacagtgtgtatgtgttataag-aaccaatcacttactgccacatcagttcgcgatgcgttcgtgatctatattcttc |
242 |
Q |
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| T |
3693825 |
tggttcaggaatgagcggaaatcacagtgtgtatgtgttataagaaaccaatcacttactgccaaatcagttcgtgatgcgttattgatcaatattcttc |
3693726 |
T |
|
| Q |
243 |
g |
243 |
Q |
| |
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| T |
3693725 |
g |
3693725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 37 - 225
Target Start/End: Complemental strand, 3679409 - 3679213
Alignment:
| Q |
37 |
cataactgtcatatttt-atttcgagtactgctatttatcaagaacacacctcataacgatcttcccgaatcgatac---gt----gtggtaattataaa |
128 |
Q |
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| T |
3679409 |
cataactgtcatattttcatttctagtactgctatttatcaagaacatgcctcatcacgatcttcccgaatcgatacaccgtacacgttgtaattattaa |
3679310 |
T |
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| Q |
129 |
ggaagaagttgtgtatagttcatgaatgagcggaaatcacagtgtgtatgtgttataag-aaccaatcacttactgccacatcagttcgcgatgcgtt |
225 |
Q |
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| T |
3679309 |
g-aagaagtagtgtatagttcaggaatgagcggaaatcacagcgtgtatgtgttataagaaaccaatcacttgctgccaaatcaattcgtgatgcgtt |
3679213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 49 - 243
Target Start/End: Complemental strand, 3675716 - 3675532
Alignment:
| Q |
49 |
attttatttcgagtactgctatttatcaagaacacacctcataacgatcttcccgaatcgatacgtgtggtaattataaaggaagaagttgtgtatagtt |
148 |
Q |
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|||||||||| |||||| |||||||||||||||||| |||| | ||||||||||||||||| ||||| ||||||||||||||||||| |||||||||| |
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| T |
3675716 |
attttatttctagtactactatttatcaagaacacatctcaccatgatcttcccgaatcgattcgtgttgtaattataaaggaagaagcagtgtatagtt |
3675617 |
T |
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| Q |
149 |
catgaatgagcggaaatcacagtgtgtatgtgttataagaaccaatcacttactgccacatcagttcgcgatgcgttcgtgatctatattcttcg |
243 |
Q |
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| T |
3675616 |
ctggaatgagcggaaatgacagcacgtaagtgttata----------acttataaccacatcagtttgtgatgcgttcgtgatctatattcttcg |
3675532 |
T |
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