View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151A_low_162 (Length: 250)
Name: NF10151A_low_162
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_low_162 |
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Alignment Details
Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 139 - 235
Target Start/End: Original strand, 43066712 - 43066808
Alignment:
| Q |
139 |
tatataccaagaatatctcatatacgtgatgacttgatttaatacgtagataaaagtgcatgaatacttccttaaacaaaagagcatgattaatgtt |
235 |
Q |
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| T |
43066712 |
tatatacgaagaatatctcatatacgtgatgacttgatttaatacgtagataaaagtgcatgaatacttccttaaaaaaaagtgcatgattaatgtt |
43066808 |
T |
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Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 43066429 - 43066482
Alignment:
| Q |
89 |
gtttattaaaatgtacaactaaaaataaacaggattctcaacactttatttata |
142 |
Q |
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| T |
43066429 |
gtttattaaaatgcacaactaaaaataaacaggattctcaacactttatttata |
43066482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 43065853 - 43065898
Alignment:
| Q |
17 |
tggatcatgcaagagtaaaaaagaaatatactggatcttgcgatta |
62 |
Q |
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| T |
43065853 |
tggatcttgcgagagtaaaaaagaaatatactggatcttgcgatta |
43065898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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