View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151A_low_169 (Length: 249)
Name: NF10151A_low_169
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_low_169 |
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Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 341060 - 340820
Alignment:
| Q |
1 |
tggaatcaattatttcgcaactttgttgtgaattatcttctcttgaaaagcttcaaagcttctttgtttgaagagatattggataagattcctattgtat |
100 |
Q |
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| T |
341060 |
tggaatcaatgatttctcaactttgttgtgaattatcttctcttgaaaagcttcaaagcttctttgtttgaagagatattggagaagattcctattgtat |
340961 |
T |
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| Q |
101 |
ttccattgatctgaatctgtagtgaaaattcctaaaccaaaaggttcaaacatttcacgaaacaaatcacccttgacaaagttgtcaaagctcttgctca |
200 |
Q |
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| T |
340960 |
ttccattgatctgaatctgtagtgaaaattcctaaaccaaaaggttcaaacatttcacgaaacaaatcacctttgacaaagttgtcaaagctcttgctca |
340861 |
T |
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| Q |
201 |
tgatgtagtgaacattcaatggatcagttgtgataacacca |
241 |
Q |
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| T |
340860 |
tgatgtagtgaacattcaatggatcagttgtgataacacca |
340820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 2 - 234
Target Start/End: Complemental strand, 337021 - 336789
Alignment:
| Q |
2 |
ggaatcaattatttcgcaactttgttgtgaattatcttctcttgaaaagcttcaaagcttctttgtttgaagagatattggataagattcctattgtatt |
101 |
Q |
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||||||||| ||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
337021 |
ggaatcaatgatttctcaactttgttgtgaatgattttctcttgaaaagcttcaaagcttctttgtttgaagagatattggagaagattcctattgtatt |
336922 |
T |
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| Q |
102 |
tccattgatctgaatctgtagtgaaaattcctaaaccaaaaggttcaaacatttcacgaaacaaatcacccttgacaaagttgtcaaagctcttgctcat |
201 |
Q |
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| T |
336921 |
tccattgatgtgaatctgtagtgaaaattcctaaaccaaaaggttggaacgtttcacgaaacctttcacctttctcaaaattgtcaaacctcttgctcat |
336822 |
T |
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| Q |
202 |
gatgtagtgaacattcaatggatcagttgtgat |
234 |
Q |
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| T |
336821 |
gatgtagtgaacattcaatggatcgtttgtgat |
336789 |
T |
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