View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10151A_low_17 (Length: 428)

Name: NF10151A_low_17
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10151A_low_17
NF10151A_low_17
[»] chr6 (4 HSPs)
chr6 (20-413)||(663602-664000)
chr6 (181-409)||(908100-908328)
chr6 (78-133)||(9024173-9024228)
chr6 (183-227)||(10157995-10158039)
[»] chr2 (1 HSPs)
chr2 (182-233)||(44605137-44605188)
[»] chr7 (5 HSPs)
chr7 (56-122)||(38134414-38134480)
chr7 (76-139)||(44172881-44172944)
chr7 (72-146)||(36314611-36314685)
chr7 (69-133)||(35238181-35238245)
chr7 (182-230)||(36314628-36314676)
[»] chr1 (2 HSPs)
chr1 (62-139)||(43328458-43328535)
chr1 (185-233)||(40158408-40158456)
[»] chr5 (1 HSPs)
chr5 (60-120)||(16315862-16315922)
[»] chr8 (1 HSPs)
chr8 (57-122)||(6501481-6501546)
[»] chr4 (2 HSPs)
chr4 (63-112)||(5654609-5654658)
chr4 (106-146)||(22402419-22402459)
[»] chr3 (1 HSPs)
chr3 (71-112)||(8039206-8039247)


Alignment Details
Target: chr6 (Bit Score: 359; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 20 - 413
Target Start/End: Complemental strand, 664000 - 663602
Alignment:
Q  20 taattagatttgaagtatgaacacctgatacaatatggacattgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  664000 taattagatttgaagtatgaacacctgatacaatatggacattgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatg 663901  T
Q  120 tgttagtgtcgtgtt-----agtgttagacacacctttgattagaagtgtcgattctaacaccatttataatttgagaaaaagacatatttcaatgaaat 214  Q
    ||||||||| |||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  663900 tgttagtgttgtgttgtgttagtgttagacacacctttgattagaagtgtcgattctaacaccatttataatttgagaaaaagacatatttcaatgaaat 663801  T
Q  215 tacatgtgtcggtgttagatacttacatgcattgtacacttggcacacctttgataagaagtgttggtgctacaaagattttatatacgaacagttttta 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||    
T  663800 tacatgtgtcggtgttagatacttacatgcattgtacacttggcacacctttgataagaagtgttggtgctacaaagattatatatatgaacaattttta 663701  T
Q  315 tggtttatgatttgcttatgtgaaattttgcctcttttgatatcagaggaagcgaggatttgtgaacggagttcgcataataatgcagtttttgatgtc 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  663700 tggtttatgatttgcttatgtgaaattttgcctcttttgatatcagaggaagcgaggatttgtgaatggagttcgcataataatgcagtttttgatgtc 663602  T

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Target: chr6; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 181 - 409
Target Start/End: Original strand, 908100 - 908328
Alignment:
Q  181 tataatttgagaaaaagacatatttcaatgaaattacatgtgtcggtgttagatacttacatgcattgtacacttggcacacctttgataagaagtgttg 280  Q
    |||||||||||||| || |||||||||||| | |||||| ||||||||||||| ||||||||| || | ||||||||||||||||||||||| |||||||    
T  908100 tataatttgagaaatagtcatatttcaatgtacttacatttgtcggtgttagacacttacatgtatcggacacttggcacacctttgataagtagtgttg 908199  T
Q  281 gtgctacaaagattttatatacgaacagtttttatggtttatgatttgcttatgtgaaattttgcctcttttgatatcagaggaagcgaggatttgtgaa 380  Q
    |||||||||||||| ||||||  ||||  |||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||| |||||||||    
T  908200 gtgctacaaagattatatatatcaacaaattttatggtttatgatttacttatgtgaaattttgcctcttttgataccagagaaagcgagaatttgtgaa 908299  T
Q  381 cggagttcgcataataatgcagtttttga 409  Q
     |||||| |||||||||||||||||||||    
T  908300 tggagtttgcataataatgcagtttttga 908328  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 133
Target Start/End: Complemental strand, 9024228 - 9024173
Alignment:
Q  78 atgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgtcgtgt 133  Q
    ||||||||||||||| ||| |||| |||||||||| || |||||| ||||||||||    
T  9024228 atgataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgtcgtgt 9024173  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 10157995 - 10158039
Alignment:
Q  183 taatttgagaaaaagacatatttcaatgaaattacatgtgtcggt 227  Q
    ||||||||||||| |||||| ||||||| ||| ||||||||||||    
T  10157995 taatttgagaaaatgacataattcaatgtaatcacatgtgtcggt 10158039  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 233
Target Start/End: Complemental strand, 44605188 - 44605137
Alignment:
Q  182 ataatttgagaaaaagacatatttcaatgaaattacatgtgtcggtgttaga 233  Q
    ||||||||||||||  ||||| ||||||| ||||||||||||||||||||||    
T  44605188 ataatttgagaaaataacataattcaatgtaattacatgtgtcggtgttaga 44605137  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 38134480 - 38134414
Alignment:
Q  56 ggacattgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgt 122  Q
    |||||| ||||||||||||| ||| |||||||||||| ||| |||| |||||||||| || ||||||    
T  38134480 ggacatggacatgttgacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgt 38134414  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 139
Target Start/End: Complemental strand, 44172944 - 44172881
Alignment:
Q  76 tgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgtcgtgttagtgt 139  Q
    |||| |||||||||||| ||| |||| |||||||||| |||||||||| |||| ||||| ||||    
T  44172944 tgataataatttgagaaaatgacataattcaatgtaatcacatgtgtttgtgttgtgttggtgt 44172881  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 146
Target Start/End: Complemental strand, 36314685 - 36314611
Alignment:
Q  72 acactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgtcgtgttagtgttagacac 146  Q
    ||||| || |||||||||||| ||| ||||||||||||||| || ||||||| |||| || || ||||| |||||    
T  36314685 acactcataataatttgagaaaatgacatatttcaatgtaatcatatgtgttggtgttgtcttggtgttggacac 36314611  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 35238245 - 35238181
Alignment:
Q  69 ttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgtcgtgt 133  Q
    ||||||| ||| ||| |||||||| ||| |||| |||||| ||| |||| |||||||||||||||    
T  35238245 ttgacaccgataatattttgagaaaatgacataattcaatataatcacacgtgttagtgtcgtgt 35238181  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 36314676 - 36314628
Alignment:
Q  182 ataatttgagaaaaagacatatttcaatgaaattacatgtgtcggtgtt 230  Q
    |||||||||||||| |||||||||||||| ||| | |||||| ||||||    
T  36314676 ataatttgagaaaatgacatatttcaatgtaatcatatgtgttggtgtt 36314628  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 62 - 139
Target Start/End: Original strand, 43328458 - 43328535
Alignment:
Q  62 tgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgtcgtgttagtgt 139  Q
    ||||| ||||||||| || |||||||||||| |||  ||| || ||||||||||||||||| | ||||||||| ||||    
T  43328458 tgacacgttgacacttataataatttgagaaaatgaaataatttaatgtaaccacatgtgtcattgtcgtgttggtgt 43328535  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 40158456 - 40158408
Alignment:
Q  185 atttgagaaaaagacatatttcaatgaaattacatgtgtcggtgttaga 233  Q
    ||||||||||| ||||||  | |||||||| ||||||||||||||||||    
T  40158456 atttgagaaaatgacataaatgaatgaaatcacatgtgtcggtgttaga 40158408  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 16315862 - 16315922
Alignment:
Q  60 attgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatgt 120  Q
    |||||||||||||||||||| |||||||||| | |||  ||| || |||||||||||||||    
T  16315862 attgacatgttgacactgataataatttgaggaaatgatataattgaatgtaaccacatgt 16315922  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 6501481 - 6501546
Alignment:
Q  57 gacattgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgt 122  Q
    |||||||||| |||||||||| | |||||||||||  |||  ||| || |||||||||||||||||    
T  6501481 gacattgacacgttgacactggtaataatttgagagaatgaaataattaaatgtaaccacatgtgt 6501546  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 5654658 - 5654609
Alignment:
Q  63 gacatgttgacactgatgataatttgagaacatggcatatttcaatgtaa 112  Q
    ||||||| ||||||||| |||||||||||| ||| |||| ||||||||||    
T  5654658 gacatgtcgacactgataataatttgagaaaatgacataattcaatgtaa 5654609  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 22402419 - 22402459
Alignment:
Q  106 aatgtaaccacatgtgttagtgtcgtgttagtgttagacac 146  Q
    |||||||||||||||||  ||||||||||||||| ||||||    
T  22402419 aatgtaaccacatgtgtcggtgtcgtgttagtgtcagacac 22402459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 8039206 - 8039247
Alignment:
Q  71 gacactgatgataatttgagaacatggcatatttcaatgtaa 112  Q
    |||||||||||||||||||||| |||||||  ||||||||||    
T  8039206 gacactgatgataatttgagaaaatggcatgattcaatgtaa 8039247  T

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