View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151A_low_178 (Length: 246)
Name: NF10151A_low_178
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_low_178 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 10 - 234
Target Start/End: Complemental strand, 30336464 - 30336240
Alignment:
| Q |
10 |
acatcaagaaagatgcaataccagatgatatggattggataaaatataatctccatcttgattcaaccctccctcttttccgctgcaaaagaagaaaaca |
109 |
Q |
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| T |
30336464 |
acatcaagaaagatgcaataccagatgatatggattggataaaatataatctccatcttgattcaaccctccctcttttccgctgcaaaagaagaaaaca |
30336365 |
T |
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| Q |
110 |
aaaagaaattccccagtgcattagatattatatacttcctagttctacttcaattgtaaatacattatggccatagcaagacatgtaaatgcagtaaggt |
209 |
Q |
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| T |
30336364 |
aaaagaaattccccagtgcattagatattatatacttcctagttctacttcaattgtaaatacattatggccatagcaagacatgtaaatgcagtaaggt |
30336265 |
T |
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| Q |
210 |
aatatataagcttcagatgcatatt |
234 |
Q |
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| T |
30336264 |
aatatataagcttcagatgcatatt |
30336240 |
T |
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Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 207
Target Start/End: Original strand, 33020227 - 33020416
Alignment:
| Q |
10 |
acatcaagaaagatgcaataccagatgatatggattggataaaatataatctccatcttgattcaaccctccctcttttccgctgcaaaagaagaaaaca |
109 |
Q |
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| T |
33020227 |
acatcaagaaagatgcaataccagatgatgcaaatttgataaaatataatctccat--------aacactccct-ttttccactacaaaaaaa--aaaca |
33020315 |
T |
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| Q |
110 |
aaaagaaattccccagtgcattagatattatatacttcctagttctacttcaattgtaaatacattatggccat---agcaagacatgtaaatgcagtaa |
206 |
Q |
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| T |
33020316 |
aaaagaaattccccagtatattagatattatatacttcctattactacttcaattgtcaatagattatgactatcggagcaaaacatgtaaatgcaataa |
33020415 |
T |
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