View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151A_low_183 (Length: 245)
Name: NF10151A_low_183
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_low_183 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 5 - 239
Target Start/End: Original strand, 31700737 - 31700972
Alignment:
| Q |
5 |
cagagatgaagcctaataacgtttacaattacaacttcatctgcaataaagaagaggtttattacacatggaacataaaagatagttcactaatatcaaa |
104 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31700737 |
cagatatgaagcctaataacgtttacaattacaacttcatctgcaataaagaagaggtttattacacatggaacatcaaagatagttcactaatatcaaa |
31700836 |
T |
|
| Q |
105 |
agtggtacttaaccaaaccagttatgaacgtccacgctacatatggtcaaaagacgacgaattatggatgctttattcaaaaataccagcagactatagt |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31700837 |
agtggtacttaaccaaaccagttatgaacgtccacgctacatatggtcaaaagacgacgaattatggatgctttattcaaaaataccagcagactattgt |
31700936 |
T |
|
| Q |
205 |
gaccactatggtctat-tggagtcaatggatactgc |
239 |
Q |
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| T |
31700937 |
gaccactatggtctatgtggagtcaatggatactgc |
31700972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 5 - 235
Target Start/End: Original strand, 31723290 - 31723521
Alignment:
| Q |
5 |
cagagatgaagcctaataacgtttacaattacaacttcatctgcaataaagaagaggtttattacacatggaacataaaagatagttcactaatatcaaa |
104 |
Q |
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||||||||||||||||| ||| || |||||| || ||||||||||||||||||||||||||||||||||||| ||||||||| | | ||||||||| |
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| T |
31723290 |
cagagatgaagcctaattctattttcagttacaattttgtctgcaataaagaagaggtttattacacatggaacatcaaagatagtactcaaatatcaaa |
31723389 |
T |
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| Q |
105 |
agtggtacttaaccaaaccagttatgaacgtccacgctacatatggtcaaaagacgacgaattatggatgctttattcaaaaataccagcagactatagt |
204 |
Q |
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| T |
31723390 |
agtggtacttaaccaaaccagtaacgatcgtccacgatacgtatggtcaaaggacgacaaatcatggaatatttattcaagaataccaggagacgattgt |
31723489 |
T |
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| Q |
205 |
gaccactatggtctat-tggagtcaatggata |
235 |
Q |
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||||| ||||||| || ||||||||||||||| |
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| T |
31723490 |
gaccattatggtcgatgtggagtcaatggata |
31723521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 11 - 235
Target Start/End: Original strand, 31716051 - 31716276
Alignment:
| Q |
11 |
tgaagcctaataacgtttacaattacaacttcatctgcaataaagaagaggtttattacacatggaacataaaagatagttcactaatatcaaaagtggt |
110 |
Q |
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||||||||||| | ||| || |||||| || |||| |||||||||||||||||||||||||||||||| ||||||||||| | | |||||||| |||| |
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| T |
31716051 |
tgaagcctaatgatattttcagttacaattttgtctggaataaagaagaggtttattacacatggaacatcaaagatagttctcaagtatcaaaaatggt |
31716150 |
T |
|
| Q |
111 |
acttaaccaaaccagttatgaacgtccacgctacatatggtcaaaagacgacgaattatggatgctttattcaaaaataccagcagactatagtgaccac |
210 |
Q |
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|||||||||||||||| | || |||||||||||| ||||||||||||||| ||||| ||||| | ||||||||| |||||| | |||| | ||||||| |
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| T |
31716151 |
acttaaccaaaccagtaaagatcgtccacgctacgtatggtcaaaagacgtcgaatcatggagggtttattcaagaatacctggagacatttgtgaccat |
31716250 |
T |
|
| Q |
211 |
tatggtctat-tggagtcaatggata |
235 |
Q |
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||||||| || ||||||||||||||| |
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| T |
31716251 |
tatggtcaatgtggagtcaatggata |
31716276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 11 - 235
Target Start/End: Original strand, 31721925 - 31722150
Alignment:
| Q |
11 |
tgaagcctaataacgtttacaattacaacttcatctgcaataaagaagaggtttattacacatggaacataaaagatagttcactaatatcaaaagtggt |
110 |
Q |
| |
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||||||||||| | ||| || |||||| || |||| |||||||||||||||||||||||||||||||| ||||||||||| | | |||||||| |||| |
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| T |
31721925 |
tgaagcctaatgatattttcagttacaattttgtctggaataaagaagaggtttattacacatggaacatcaaagatagttctcaagtatcaaaaatggt |
31722024 |
T |
|
| Q |
111 |
acttaaccaaaccagttatgaacgtccacgctacatatggtcaaaagacgacgaattatggatgctttattcaaaaataccagcagactatagtgaccac |
210 |
Q |
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|||||||||||||||| | || |||||||||||| ||||||||||||||| ||||| ||||| | ||||||||| |||||| | |||| | ||||||| |
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| T |
31722025 |
acttaaccaaaccagtaaagatcgtccacgctacgtatggtcaaaagacgtcgaatcatggagggtttattcaagaatacctggagacatttgtgaccat |
31722124 |
T |
|
| Q |
211 |
tatggtctat-tggagtcaatggata |
235 |
Q |
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||||||| || ||||||||||||||| |
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| T |
31722125 |
tatggtcaatgtggagtcaatggata |
31722150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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