View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151A_low_191 (Length: 243)
Name: NF10151A_low_191
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_low_191 |
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Alignment Details
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 2601045 - 2600832
Alignment:
| Q |
13 |
atactttaaccctttatctcattccattcaattaataatactaagaaaaatttgaatcaacggcgaaaagttaagagacagaaaaacatgaagtccgtct |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
2601045 |
atactttaaccctttatctcattccattcaattaataatactgagaaaaatttgaatcaacgacgaaaagttaagagacagataaacatgaagtccgtct |
2600946 |
T |
|
| Q |
113 |
ctat--gtgttaaagacaccctcaaatgcagattaattcaattttttcatttctattttctgtcgctaattgaactttttctagtattcatagctcaaac |
210 |
Q |
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|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
2600945 |
ctatatgtgttgaagacaccctcaaatgcagattaattcaattttttcatttctattttctgtcgctaattgaactttttctagtattgattgctcaaac |
2600846 |
T |
|
| Q |
211 |
atttggtatgtttg |
224 |
Q |
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|||||||||||||| |
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| T |
2600845 |
atttggtatgtttg |
2600832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 13 - 190
Target Start/End: Complemental strand, 2573567 - 2573390
Alignment:
| Q |
13 |
atactttaaccctttatctcattccattcaattaataatactaagaaaaat-ttgaatcaacggcgaaaagttaagagacagaaaaacatgaagtccgtc |
111 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| || | ||||||| |||||||| || ||||||||||||| ||| |||||||||||||||||| |
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| T |
2573567 |
atactttaaccctttatctcattccattcaattaatactattcagaaaaaagttgaatcagcgacgaaaagttaagatacaaaaaaacatgaagtccgtc |
2573468 |
T |
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| Q |
112 |
tctatgtgttaaagacaccctcaaatgcagattaattcaattttttcatttctattttctgtcgctaattgaacttttt |
190 |
Q |
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||||||||||| ||||| | | || |||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2573467 |
tctatgtgttagagacatcat-aattgcatagtaattcaattttttcatttctattttctgtcgctaattgaacttttt |
2573390 |
T |
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