View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10151A_low_195 (Length: 242)

Name: NF10151A_low_195
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10151A_low_195
NF10151A_low_195
[»] chr7 (8 HSPs)
chr7 (35-226)||(26617742-26617933)
chr7 (86-226)||(39865471-39865611)
chr7 (35-226)||(33190303-33190494)
chr7 (35-162)||(14719370-14719501)
chr7 (35-186)||(7578536-7578687)
chr7 (137-218)||(14719287-14719367)
chr7 (138-199)||(37479556-37479617)
chr7 (35-153)||(35339023-35339141)
[»] chr4 (16 HSPs)
chr4 (35-219)||(52311220-52311404)
chr4 (59-226)||(54687660-54687826)
chr4 (65-210)||(20275938-20276082)
chr4 (35-195)||(5350929-5351089)
chr4 (65-226)||(26997226-26997387)
chr4 (59-226)||(54678540-54678709)
chr4 (38-223)||(17365674-17365858)
chr4 (65-226)||(26992029-26992193)
chr4 (135-226)||(6408036-6408126)
chr4 (136-222)||(22746635-22746721)
chr4 (35-197)||(27360193-27360354)
chr4 (35-226)||(12746524-12746715)
chr4 (173-226)||(14000179-14000230)
chr4 (38-160)||(18902113-18902234)
chr4 (173-224)||(13994875-13994924)
chr4 (105-161)||(20355099-20355155)
[»] chr5 (8 HSPs)
chr5 (35-226)||(16633256-16633446)
chr5 (65-226)||(19779955-19780116)
chr5 (65-219)||(19479453-19479607)
chr5 (35-162)||(17604690-17604821)
chr5 (65-226)||(19783203-19783363)
chr5 (137-199)||(17604824-17604886)
chr5 (35-78)||(21575046-21575089)
chr5 (35-127)||(35105030-35105122)
[»] chr1 (6 HSPs)
chr1 (58-226)||(40274361-40274530)
chr1 (65-226)||(40279150-40279311)
chr1 (56-226)||(29530120-29530291)
chr1 (56-220)||(29547775-29547940)
chr1 (36-199)||(28201654-28201817)
chr1 (104-186)||(27417427-27417509)
[»] chr3 (7 HSPs)
chr3 (113-227)||(8832532-8832646)
chr3 (101-226)||(39875817-39875940)
chr3 (114-226)||(44126711-44126823)
chr3 (35-157)||(21587185-21587306)
chr3 (175-226)||(13921708-13921757)
chr3 (35-151)||(20458819-20458933)
chr3 (35-108)||(20463226-20463299)
[»] chr2 (3 HSPs)
chr2 (35-199)||(19912279-19912443)
chr2 (35-112)||(34111054-34111131)
chr2 (39-161)||(45276354-45276475)
[»] chr8 (6 HSPs)
chr8 (136-222)||(17909890-17909977)
chr8 (168-214)||(10739137-10739183)
chr8 (168-222)||(15007178-15007231)
chr8 (172-226)||(36911929-36911983)
chr8 (135-216)||(10734068-10734149)
chr8 (88-212)||(12145639-12145764)
[»] chr6 (1 HSPs)
chr6 (175-226)||(23599935-23599986)
[»] scaffold0248 (1 HSPs)
scaffold0248 (173-226)||(16258-16311)


Alignment Details
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 35 - 226
Target Start/End: Complemental strand, 26617933 - 26617742
Alignment:
Q  35 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26617933 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 26617834  T
Q  135 ttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 226  Q
    |||  ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  26617833 ttgaatcctataaatagggctcatattgaattgtaaagacacacttgtgaagagaataatacaaagtgttttcatcttcttcttcctcttct 26617742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 86 - 226
Target Start/End: Original strand, 39865471 - 39865611
Alignment:
Q  86 agtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaa 185  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||| | |||  |||||||||||  ||||    
T  39865471 agtgaatagttagtggaccttaattgtcttgatcactcacttactcatcttgtgtactataaatagggctcatatcgtattgcaaagacacactcttgaa 39865570  T
Q  186 gagaataatacaaagtgctttcatcttcttcttcctcttct 226  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  39865571 gagaataatacaaagtgctttcatcttctccttcctcttct 39865611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 35 - 226
Target Start/End: Complemental strand, 33190494 - 33190303
Alignment:
Q  35 ttagtggatttccatcctta-gtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcat 133  Q
    ||||||||| | |||||||| ||||||||| |||||||||   |||||  | |||||||||||| ||||||||| ||  |||||||||||||||| ||||    
T  33190494 ttagtggatgtacatccttaagtctttcaccttcctataatttccattggtaagtgaatagttactggaccttagttgccttgatcactcacttactcat 33190395  T
Q  134 cttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 226  Q
    |||||||  ||||| |||| ||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33190394 cttgtgtattataa-taggtctcatattgtattgcaaagacacacttgtgaagagaataatacaaagtgctttcatcttctccttcctcttct 33190303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 35 - 162
Target Start/End: Complemental strand, 14719501 - 14719370
Alignment:
Q  35 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaata----gttagtggaccttaattatcttgatcactcacttatt 130  Q
    ||||||||| ||| ||||||||||| ||| |||||||||||||||||| ||||||||||    ||||||||||||||||||| |||||||||||  ||||    
T  14719501 ttagtggatgtccgtccttagtcttccaccttcctataacccccattagtgagtgaatatatagttagtggaccttaattattttgatcactcagctatt 14719402  T
Q  131 catcttgtgtcctataaataggactcatattg 162  Q
    ||| |||| || ||||||||||||||||||||    
T  14719401 cattttgtatcttataaataggactcatattg 14719370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 35 - 186
Target Start/End: Original strand, 7578536 - 7578687
Alignment:
Q  35 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 134  Q
    ||||||||| ||||||||||||||| ||| |||| ||||  ||||| | ||| || || || ||||| |||||||||  ||||||| ||||||  | ||     
T  7578536 ttagtggatgtccatccttagtcttccaccttcccataagtcccataagtgaatggatggtcagtggtccttaattactttgatcattcacttgcttata 7578635  T
Q  135 ttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaag 186  Q
    |||| ||||||||||||||||||||||  | | |||||||||||||| ||||    
T  7578636 ttgtatcctataaataggactcatattatagtataaagacacacttgagaag 7578687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 137 - 218
Target Start/End: Complemental strand, 14719367 - 14719287
Alignment:
Q  137 gtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttctt 218  Q
    |||||||||||||||| ||||||||| | | ||||  ||||||||||||||||||||||||||  |||||||||||||||||    
T  14719367 gtgtcctataaatagggctcatattgtagtgtaaatgcacacttgtgaagagaataatacaaa-agctttcatcttcttctt 14719287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 37479617 - 37479556
Alignment:
Q  138 tgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaa 199  Q
    |||||||||||||||||  |||||| | | |||||| ||| |||||||||||||||||||||    
T  37479617 tgtcctataaataggacctatattgcaatgtaaagaaacatttgtgaagagaataatacaaa 37479556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 153
Target Start/End: Complemental strand, 35339141 - 35339023
Alignment:
Q  35 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 134  Q
    ||||||||| |||||| |||||||| ||| |||||||||| ||||| | ||| || || |||| ||| |||||||||  |||||   |||| |  ||||     
T  35339141 ttagtggatgtccatcattagtcttccaccttcctataactcccataagtgaatggatggttaatggtccttaattactttgatatttcacatgctcata 35339042  T
Q  135 ttgtgtcctataaatagga 153  Q
    |||| ||||||||||||||    
T  35339041 ttgtatcctataaatagga 35339023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 35 - 219
Target Start/End: Complemental strand, 52311404 - 52311220
Alignment:
Q  35 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 134  Q
    |||||| || ||||||| ||||||| ||| ||||||||||||| |||  |||||||||||||||||||||||||||   ||||||||||||||| |||||    
T  52311404 ttagtgaatgtccatccctagtcttccaccttcctataacccctattggtgagtgaatagttagtggaccttaatttctttgatcactcacttagtcatc 52311305  T
Q  135 ttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttc 219  Q
    ||||||||||||||||||| |||||||| | | |||||||||| ||||||||||||||||||||| || ||||||| ||||||||    
T  52311304 ttgtgtcctataaataggattcatattgcagtgtaaagacacatttgtgaagagaataatacaaaatgttttcatcatcttcttc 52311220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 59 - 226
Target Start/End: Complemental strand, 54687826 - 54687660
Alignment:
Q  59 ttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcat 158  Q
    ||||||||||||||||||| |||| | |||||||| |||| |||||| |||| ||||||||||| ||||| ||||||||| | |||||||||||  ||||    
T  54687826 ttcactttcctataacccc-attagtaagtgaataattaggggacctcaattttcttgatcacttacttactcatcttgtatactataaatagggttcat 54687728  T
Q  159 attgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 226  Q
    |||| ||| |||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  54687727 attgtattataaagatacacttgtgaagagaataatacaaagtgatttcatcttctccttcctcttct 54687660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 65 - 210
Target Start/End: Original strand, 20275938 - 20276082
Alignment:
Q  65 ttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaa 164  Q
    ||||||||||  |||||| | ||||||||||||||||||||||| |  |||||||||||||||| ||||||| ||| ||||||||||||||||||||| |    
T  20275938 ttcctataacttccattagtaagtgaatagttagtggaccttaactgccttgatcactcacttactcatcttatgtactataaataggactcatattgta 20276037  T
Q  165 ttctaaagacacacttgtgaagagaataatacaaagtgctttcatc 210  Q
    || ||||||||||| |||||| |||||||||||||| |||||||||    
T  20276038 ttgtaaagacacacatgtgaacagaataatacaaag-gctttcatc 20276082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 35 - 195
Target Start/End: Original strand, 5350929 - 5351089
Alignment:
Q  35 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 134  Q
    ||||||||| ||||||||||||||| ||| ||||||||| | ||||||  |||||||||||||| ||||||||||||| |||||| | |||||| ||||     
T  5350929 ttagtggatgtccatccttagtcttccaccttcctataatctccattagcgagtgaatagttagcggaccttaattattttgatcgc-cacttactcatt 5351027  T
Q  135 ttgtgtcctataaataggactcatattgaatt-ctaaagacacacttgtgaagagaataata 195  Q
    |||||||||||||||||||||||||||  |||   ||||||||||||||||| |||||||||    
T  5351028 ttgtgtcctataaataggactcatattttattgaaaaagacacacttgtgaatagaataata 5351089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 65 - 226
Target Start/End: Original strand, 26997226 - 26997387
Alignment:
Q  65 ttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaa 164  Q
    |||||||||| | ||||| | |||||||||| |||| ||||||||    |||| |||| ||||| ||||||||||| ||||||||||||||||||||  |    
T  26997226 ttcctataactctcattagtaagtgaatagtcagtgaaccttaatagctttgaacactaacttactcatcttgtgtactataaataggactcatattata 26997325  T
Q  165 ttctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 226  Q
    ||  ||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  26997326 ttgcaaagacatacttgtgaagagaataatacaaagtgctttcatcttctcctttctcttct 26997387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 59 - 226
Target Start/End: Complemental strand, 54678709 - 54678540
Alignment:
Q  59 ttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactc--acttattcatcttgtgtcctataaataggactc 156  Q
    ||||| |||||||||||||| ||| | ||||||||||| |||||||||||||   |||||||| |  ||||| |||||||||||  ||||||||||||||    
T  54678709 ttcaccttcctataacccccgttattaagtgaatagttggtggaccttaatttcattgatcacacttacttactcatcttgtgtattataaataggactc 54678610  T
Q  157 atattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 226  Q
    |||||  ||| |||||| ||  ||||||||||||||||| |||||| ||||||||||| |||||||||||    
T  54678609 atattatattgtaaagatacgtttgtgaagagaataataaaaagtgttttcatcttctccttcctcttct 54678540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 38 - 223
Target Start/End: Original strand, 17365674 - 17365858
Alignment:
Q  38 gtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttg 137  Q
    |||||| | ||||||||||||| || |||| |||||||  ||||| |||||||||||||||||||||||||||   ||||||||||||||| ||||||||    
T  17365674 gtggatgttcatccttagtcttccattttcttataaccttcattagtgagtgaatagttagtggaccttaatttctttgatcactcacttactcatcttg 17365773  T
Q  138 tgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctct 223  Q
    ||||||||||||| | ||| ||||  | | |||||| ||  ||||||| | ||||||||||| || ||||| | ||||||||||||    
T  17365774 tgtcctataaataaggctc-tattatagtgtaaagaaacctttgtgaacaaaataatacaaaatgttttcaccatcttcttcctct 17365858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 65 - 226
Target Start/End: Original strand, 26992029 - 26992193
Alignment:
Q  65 ttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaa 164  Q
    |||||||||  | ||||| | |||||||||||||||||||||||||  |||||||||| |||||||||||  |||| ||||||||||| ||||||||  |    
T  26992029 ttcctataaatctcattagtaagtgaatagttagtggaccttaattgccttgatcactaacttattcatcccgtgtactataaatagggctcatattata 26992128  T
Q  165 ttctaaagacacacttgtgaagag---aataatacaaagtgctttcatcttcttcttcctcttct 226  Q
    ||  ||||| | ||||||||||||   ||||||||||||| ||||||||||||  ||||||||||    
T  26992129 ttgcaaagatatacttgtgaagagaataataatacaaagtactttcatcttctctttcctcttct 26992193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 135 - 226
Target Start/End: Original strand, 6408036 - 6408126
Alignment:
Q  135 ttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 226  Q
    ||||||||||||||||||||  |||||| |   ||||| |||||||||||||||||||||||||| | ||||||||||||||||| ||||||    
T  6408036 ttgtgtcctataaataggacctatattgcaaagtaaaggcacacttgtgaagagaataatacaaaat-ctttcatcttcttcttcttcttct 6408126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 136 - 222
Target Start/End: Original strand, 22746635 - 22746721
Alignment:
Q  136 tgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctc 222  Q
    |||||||||||||||||||  | |||  | | ||| ||||| |||||||||||||||||||||||| |||||||||||||| |||||    
T  22746635 tgtgtcctataaataggacctacattacaatgtaatgacacccttgtgaagagaataatacaaagtactttcatcttcttcctcctc 22746721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 197
Target Start/End: Original strand, 27360193 - 27360354
Alignment:
Q  35 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 134  Q
    ||||||||| | ||||  ||||||| ||| |||||||||| || || ||||| |  || |||||||| |||||||||  ||||||| |||||| |||||     
T  27360193 ttagtggatgttcatcagtagtcttccaccttcctataactcc-ataaatgaatagatggttagtggtccttaattactttgatcattcacttgttcata 27360291  T
Q  135 ttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataataca 197  Q
    |||| ||||||||||||||||  ||||  | | ||||||||| |||||||| | |||||||||    
T  27360292 ttgtatcctataaataggacttgtattatagtgtaaagacacgcttgtgaaaaaaataataca 27360354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 226
Target Start/End: Complemental strand, 12746715 - 12746524
Alignment:
Q  35 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 134  Q
    ||||||||| |||||||| | |||| ||| ||||||||||| | |||| ||| || ||| ||| ||| ||||||| |  ||||||| ||||||  ||||     
T  12746715 ttagtggatgtccatcctcaatcttccaccttcctataaccactattagtgaatgtatacttaatggtccttaatgactttgatcattcacttgctcat- 12746617  T
Q  135 ttgtgtcctataaataggactcatattgaattctaaa-gacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 226  Q
    ||| ||||||||||||| ||  |||||  | | | || ||||||||| |||| ||||||||||||  | |||||||||||||| |||||||||    
T  12746616 ttgcgtcctataaatagaacctatattataatgtgaatgacacacttatgaaaagaataatacaatatactttcatcttcttcctcctcttct 12746524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 14000179 - 14000230
Alignment:
Q  173 acacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 226  Q
    ||||||||||||||||||||| |||||  ||||||||| |||||||||||||||    
T  14000179 acacacttgtgaagagaataacacaaa--gctttcatcatcttcttcctcttct 14000230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 38 - 160
Target Start/End: Complemental strand, 18902234 - 18902113
Alignment:
Q  38 gtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttg 137  Q
    |||||| | |||||||| |||||||| ||||||||||| |||||| ||| || ||  ||| ||| |||||||| | ||||||  ||||||  |||| |||    
T  18902234 gtggatgttcatccttaatctttcaccttcctataacctccattagtgaatggatgcttaatggtccttaattgttttgatctttcacttgctcat-ttg 18902136  T
Q  138 tgtcctataaataggactcatat 160  Q
    ||||||||||||  |||||||||    
T  18902135 tgtcctataaatctgactcatat 18902113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 13994875 - 13994924
Alignment:
Q  173 acacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctctt 224  Q
    ||||||||||||||||||||| |||||  ||||||||| |||||||||||||    
T  13994875 acacacttgtgaagagaataacacaaa--gctttcatcatcttcttcctctt 13994924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 20355155 - 20355099
Alignment:
Q  105 ttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatatt 161  Q
    |||||||  ||||||| ||| || ||||| |||| ||||||||||||||||||||||    
T  20355155 ttaattactttgatcattcagttgttcatattgtatcctataaataggactcatatt 20355099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 35 - 226
Target Start/End: Complemental strand, 16633446 - 16633256
Alignment:
Q  35 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 134  Q
    ||||||||| ||||||||||||||| ||| ||||||||||||| ||||  |||||||||||||||||||||||||||  ||||||| ||||||| ||| |    
T  16633446 ttagtggatgtccatccttagtcttccaccttcctataacccc-attagcgagtgaatagttagtggaccttaattactttgatcattcacttactcaac 16633348  T
Q  135 ttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 226  Q
    |||||||||||||||||| ||||||||| |||  |||||||| |||||||||||||||||| |||  | ||||||| || ||||| ||||||    
T  16633347 ttgtgtcctataaatagggctcatattgtattgcaaagacacgcttgtgaagagaataatataaaaggttttcatcatcatcttcttcttct 16633256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 65 - 226
Target Start/End: Complemental strand, 19780116 - 19779955
Alignment:
Q  65 ttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaa 164  Q
    |||||||||| | ||||| | |||||||||||||||||||||||||| |||||||||||||||| || |||||||| ||||||||||| ||||||||| |    
T  19780116 ttcctataactctcattagtaagtgaatagttagtggaccttaattaccttgatcactcacttactcgtcttgtgtactataaatagggctcatattgta 19780017  T
Q  165 ttctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 226  Q
    ||  |||||||||||  ||||||||||||||||||||||||| |||||||  ||||||||||    
T  19780016 ttacaaagacacactcttgaagagaataatacaaagtgcttttatcttctcattcctcttct 19779955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 65 - 219
Target Start/End: Complemental strand, 19479607 - 19479453
Alignment:
Q  65 ttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaa 164  Q
    |||||||||| | ||||| | |||||||||||||||||||||||||  ||||||||||| |||| ||||||||||| ||||||||||| || |||||| |    
T  19479607 ttcctataactctcattagtaagtgaatagttagtggaccttaattgccttgatcactcgcttactcatcttgtgtactataaatagggcttatattgta 19479508  T
Q  165 ttctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttc 219  Q
    || ||||||||||||| | |||||||||||||||||| |||||||||||||||||    
T  19479507 ttgtaaagacacacttataaagagaataatacaaagttctttcatcttcttcttc 19479453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 35 - 162
Target Start/End: Original strand, 17604690 - 17604821
Alignment:
Q  35 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaata----gttagtggaccttaattatcttgatcactcacttatt 130  Q
    ||||||||| ||||||||||||||| ||| |||||||||||||||||| ||||||||||    ||||||||||||||||||| |||||||||||  ||||    
T  17604690 ttagtggatgtccatccttagtcttccaccttcctataacccccattagtgagtgaatatatagttagtggaccttaattattttgatcactcagctatt 17604789  T
Q  131 catcttgtgtcctataaataggactcatattg 162  Q
    ||| |||| || ||||||||||||||||||||    
T  17604790 cattttgtatcttataaataggactcatattg 17604821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 65 - 226
Target Start/End: Complemental strand, 19783363 - 19783203
Alignment:
Q  65 ttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaa 164  Q
    |||||||||| | ||||| | ||||||||||||||||| |||||||   || |||||||||||| ||||||||||| ||||||||||  ||||||||| |    
T  19783363 ttcctataactctcattagtaagtgaatagttagtggaacttaattgctttcatcactcacttactcatcttgtgtactataaatagtgctcatattgta 19783264  T
Q  165 ttctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 226  Q
    | | |||||||||||  ||||||||||||||||||||||||| ||||||| ||| |||||||    
T  19783263 tgc-aaagacacactcttgaagagaataatacaaagtgcttttatcttctcctttctcttct 19783203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 137 - 199
Target Start/End: Original strand, 17604824 - 17604886
Alignment:
Q  137 gtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaa 199  Q
    |||||||||||||||| ||||||||| | | ||||  ||||||||||||||||||||||||||    
T  17604824 gtgtcctataaatagggctcatattgtagtgtaaatgcacacttgtgaagagaataatacaaa 17604886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 78
Target Start/End: Complemental strand, 21575089 - 21575046
Alignment:
Q  35 ttagtggatttccatccttagtctttcactttcctataaccccc 78  Q
    ||||||||| ||||||||||||||| ||| ||||||||||||||    
T  21575089 ttagtggatgtccatccttagtcttccaccttcctataaccccc 21575046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 127
Target Start/End: Original strand, 35105030 - 35105122
Alignment:
Q  35 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcactt 127  Q
    ||||||||| ||||||||||||||| ||| || | ||||| ||||| | ||| || || |||||||  |||||||||  ||||||| ||||||    
T  35105030 ttagtggatgtccatccttagtcttacaccttgcaataactcccataagtgaatggatggttagtgatccttaattactttgatcattcactt 35105122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 58 - 226
Target Start/End: Complemental strand, 40274530 - 40274361
Alignment:
Q  58 tttcactttcctataacccccattaatgagtgaa-tagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactc 156  Q
    |||||| ||| |||||| ||||||| | |||||| |||||||||||| ||||||  |||||||||||||||| |||||||||||  |||||||||| ||     
T  40274530 tttcaccttcttataactcccattagtaagtgaaatagttagtggactttaattgccttgatcactcacttactcatcttgtgtattataaatagggcta 40274431  T
Q  157 atattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 226  Q
    |||||| |||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  40274430 atattgtattgcaaagacacacttgtgaagagaataatacaaagtgctttcatcttctccttcctcttct 40274361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 65 - 226
Target Start/End: Complemental strand, 40279311 - 40279150
Alignment:
Q  65 ttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaa 164  Q
    |||||||||| ||||||| | |||||||||||||||||||||||||  |||||||||||||||| ||||||||||| |||||||||||  |||||||| |    
T  40279311 ttcctataactcccattagtaagtgaatagttagtggaccttaattgccttgatcactcacttactcatcttgtgtactataaatagggttcatattgta 40279212  T
Q  165 ttctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 226  Q
    ||  ||||||||| ||||||||||||||||| |||||| ||||||||||| ||| |||||||    
T  40279211 ttgcaaagacacatttgtgaagagaataatataaagtgttttcatcttctcctttctcttct 40279150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 226
Target Start/End: Original strand, 29530120 - 29530291
Alignment:
Q  56 tctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggact 155  Q
    |||| ||||||||| ||| |||||| | | | || || |||||||| ||||||||   ||||||| ||||||  |||| ||||||| ||||||||||||     
T  29530120 tcttccactttcctgtaaaccccatcagtaaatgcatggttagtggtccttaattggtttgatcattcacttgctcat-ttgtgtcatataaataggacc 29530218  T
Q  156 catattgaattctaaaga-cacacttgtgaag-agaataatacaaagtgctttcatcttcttcttcctcttct 226  Q
     |||||| | | |||||| ||||||||  ||  |||||||||||||||| |||||||| ||||||||||||||    
T  29530219 tatattgtaatgtaaagaacacacttgaaaaatagaataatacaaagtgttttcatctccttcttcctcttct 29530291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 220
Target Start/End: Original strand, 29547775 - 29547940
Alignment:
Q  56 tctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggact 155  Q
    |||| ||| ||||||||| |||||||| | | || || |||||||| ||||||||   ||||||| ||||||  |||| || |||||||||||||||||     
T  29547775 tcttccaccttcctataatccccattagtaaatgcatggttagtggtccttaatttgtttgatcattcacttgctcat-ttatgtcctataaataggacc 29547873  T
Q  156 catattgaattctaaaga-cacacttgtgaa-gagaataatacaaagtgctttcatcttcttcttcc 220  Q
     |||||| | | |||||| ||||||||  || |||||||||||||| |  |||||||||||||||||    
T  29547874 tatattgtaatgtaaagaacacacttgaaaaagagaataatacaaaatattttcatcttcttcttcc 29547940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 199
Target Start/End: Complemental strand, 28201817 - 28201654
Alignment:
Q  36 tagtggatttccatccttagtctttcactttcctataaccc-ccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 134  Q
    |||||||| |||||||||  |||| ||| |||||||||||| |||||| ||| || || |||||| | | ||||||   ||||| | |||||| |||||     
T  28201817 tagtggatgtccatcctttatcttccaccttcctataaccctccattagtgaatgtatggttagtagtctttaattgctttgataattcacttgttcat- 28201719  T
Q  135 ttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaa 199  Q
    || ||||||||||||| ||||||||||  | | |||   ||||||||| ||||||||| ||||||    
T  28201718 ttatgtcctataaatatgactcatattttaatgtaatagcacacttgtaaagagaatagtacaaa 28201654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 186
Target Start/End: Complemental strand, 27417509 - 27417427
Alignment:
Q  104 cttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaag 186  Q
    ||||||||  ||||||| ||||||| |||| |||| || |||||||||||||| ||||  | | |||||||||||||| ||||    
T  27417509 cttaattaatttgatcattcacttactcatattgtatcttataaataggactcgtattataatgtaaagacacacttgagaag 27417427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 113 - 227
Target Start/End: Complemental strand, 8832646 - 8832532
Alignment:
Q  113 cttgatcactcacttattcatcttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatctt 212  Q
    |||||||||||||||| ||||||||||| |||||||||||  |||||||| |||  ||||||||| |  ||||||||||||||||||||| ||||||| |    
T  8832646 cttgatcactcacttactcatcttgtgtactataaatagggttcatattgtattgcaaagacacagtcttgaagagaataatacaaagtgatttcatcct 8832547  T
Q  213 cttcttcctcttctc 227  Q
    || ||||||||||||    
T  8832546 ctccttcctcttctc 8832532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 226
Target Start/End: Original strand, 39875817 - 39875940
Alignment:
Q  101 gaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaag 200  Q
    ||||||||||  |||||||||||||||| ||||||||||| |||||||||   ||| ||||| |||  |||||||||||||||||||||  ||||||||     
T  39875817 gaccttaattgccttgatcactcacttactcatcttgtgtactataaataaagctcctattgtattgcaaagacacacttgtgaagaga--aatacaaat 39875914  T
Q  201 tgctttcatcttcttcttcctcttct 226  Q
    | |||||||||||||| |||| ||||    
T  39875915 tactttcatcttcttcctccttttct 39875940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 114 - 226
Target Start/End: Complemental strand, 44126823 - 44126711
Alignment:
Q  114 ttgatcactcacttattcatcttgtgtcctataaataggactcatattgaattctaaa-gacacacttgtgaagagaataatacaaagtgctttcatctt 212  Q
    ||||||| ||||||  |||| ||||||||||||||||||||  |||||| | | | || |||||||||||||||||||||||||||||| ||||||||||    
T  44126823 ttgatcattcacttgctcat-ttgtgtcctataaataggacctatattgtaatgtgaatgacacacttgtgaagagaataatacaaagtactttcatctt 44126725  T
Q  213 cttcttcctcttct 226  Q
    |||||| |||||||    
T  44126724 cttctttctcttct 44126711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 157
Target Start/End: Complemental strand, 21587306 - 21587185
Alignment:
Q  35 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 134  Q
    ||||||| | |||| ||||| |||| ||| |||||||||||||||||| |||  | || |||||||  |||||| |   ||||||| ||||||  ||||     
T  21587306 ttagtgggtgtccacccttaatcttccaccttcctataacccccattagtgaaagtatggttagtgatccttaactgctttgatcattcacttgctcat- 21587208  T
Q  135 ttgtgtcctataaataggactca 157  Q
    |||||||||||||||||||||||    
T  21587207 ttgtgtcctataaataggactca 21587185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 226
Target Start/End: Original strand, 13921708 - 13921757
Alignment:
Q  175 acacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 226  Q
    ||||||||||||||||||| |||||  ||||||||| |||||||||||||||    
T  13921708 acacttgtgaagagaataacacaaa--gctttcatcatcttcttcctcttct 13921757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 151
Target Start/End: Complemental strand, 20458933 - 20458819
Alignment:
Q  35 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 134  Q
    ||||||||| |||||||||| |||| ||| ||||||||| |||||||| ||| ||  | ||||||| ||||||| | | ||||||| ||||||  ||||     
T  20458933 ttagtggatgtccatccttaatcttccaccttcctataa-ccccattagtgaatgtttggttagtgaaccttaaatgttttgatcattcacttgctcat- 20458836  T
Q  135 ttgtgtcctataaatag 151  Q
    ||||| |||||||||||    
T  20458835 ttgtgacctataaatag 20458819  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 108
Target Start/End: Complemental strand, 20463299 - 20463226
Alignment:
Q  35 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaa 108  Q
    ||||||||| ||||| ||||||||| | | ||||||||| ||| |||| ||| || || |||||||||||||||    
T  20463299 ttagtggatgtccattcttagtcttcctccttcctataatccctattagtgaatgtatggttagtggaccttaa 20463226  T

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Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 35 - 199
Target Start/End: Original strand, 19912279 - 19912443
Alignment:
Q  35 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 134  Q
    ||||||||| |||| ||||| |||| ||| ||||||||||||| |||| ||| || || |||||| | ||||||||   ||||||||||||||  ||||     
T  19912279 ttagtggatgtccacccttaatcttccaccttcctataacccctattattgaatgtatggttagtagtccttaattgctttgatcactcacttgctcat- 19912377  T
Q  135 ttgtgtcctataaataggactcatatt-gaattctaaagacacacttgtgaagagaataatacaaa 199  Q
    ||||||||||||||||||||  |||||  |||   ||| | |||||||||||||||||||||||||    
T  19912378 ttgtgtcctataaataggacctatattataatgtaaaatatacacttgtgaagagaataatacaaa 19912443  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 34111131 - 34111054
Alignment:
Q  35 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattat 112  Q
    ||||||||| |||||||||| || | ||| |||||||||| | ||||| |||||||||||||||||||||||||||||    
T  34111131 ttagtggatgtccatccttaatcatccaccttcctataactcgcattagtgagtgaatagttagtggaccttaattat 34111054  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 161
Target Start/End: Original strand, 45276354 - 45276475
Alignment:
Q  39 tggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgt 138  Q
    ||||| ||||||| |  |||| ||| ||||||||||||   ||| ||| || || |||||||| |||||||  | |||| || ||||||| |||| ||||    
T  45276354 tggatgtccatccctcatcttccaccttcctataacccatgttagtgaatgtatggttagtggtccttaatagttttgaccattcacttactcat-ttgt 45276452  T
Q  139 gtcctataaataggactcatatt 161  Q
    |||||||||||||||||||||||    
T  45276453 gtcctataaataggactcatatt 45276475  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 222
Target Start/End: Original strand, 17909890 - 17909977
Alignment:
Q  136 tgtgtcctataaataggactcatattgaattctaaaga-cacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctc 222  Q
    |||||||||||||||||||| ||||   | | |||||| |||||||| ||||||||||||||||||| |||||||||||| |||||||    
T  17909890 tgtgtcctataaataggacttatatctcaatgtaaagaacacacttgagaagagaataatacaaagtactttcatcttctccttcctc 17909977  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 168 - 214
Target Start/End: Original strand, 10739137 - 10739183
Alignment:
Q  168 taaagacacacttgtgaagagaataatacaaagtgctttcatcttct 214  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||    
T  10739137 taaagatatacttgtgaagagaataatacaaagtgctttcatcttct 10739183  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 15007178 - 15007231
Alignment:
Q  168 taaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctc 222  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||| |||||||    
T  15007178 taaagacacactggtgaagaga-taatacaaagtgctttcatcttctccttcctc 15007231  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 36911983 - 36911929
Alignment:
Q  172 gacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 226  Q
    ||||||||| |||||||||||||| |||||| ||||| |||||||||||||||||    
T  36911983 gacacacttctgaagagaataataaaaagtgttttcaccttcttcttcctcttct 36911929  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 216
Target Start/End: Original strand, 10734068 - 10734149
Alignment:
Q  135 ttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttc 216  Q
    |||| |||||||||||||||  | ||||   | |||||| | |||||||||||||||||||||||||| |||||||||||||    
T  10734068 ttgtatcctataaataggacctacattgtcatgtaaagatatacttgtgaagagaataatacaaagtgttttcatcttcttc 10734149  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 212
Target Start/End: Complemental strand, 12145764 - 12145639
Alignment:
Q  88 tgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaa-taggactcatattgaattctaaagacacacttgtgaag 186  Q
    ||||||||||||||  ||||||||  ||||||||||||||  |||| |||||||||||||| || ||||||| |   | | |||| |||||||| |||||    
T  12145764 tgaatagttagtggttcttaattactttgatcactcacttgctcattttgtgtcctataaaataagactcatttgttagtgtaaaaacacacttctgaag 12145665  T
Q  187 agaataatacaaagtgctttcatctt 212  Q
    || |||||||| |  |||||||||||    
T  12145664 aggataatacacaaagctttcatctt 12145639  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 175 - 226
Target Start/End: Complemental strand, 23599986 - 23599935
Alignment:
Q  175 acacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 226  Q
    |||||| |||||||||||||||||| ||||||||||||||||||| ||||||    
T  23599986 acacttatgaagagaataatacaaaatgctttcatcttcttcttcatcttct 23599935  T

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Target: scaffold0248 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 16258 - 16311
Alignment:
Q  173 acacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 226  Q
    |||||| |||||||| |||||||||||||||||| || || |||||||||||||    
T  16258 acacacctgtgaagaaaataatacaaagtgcttttatatttttcttcctcttct 16311  T

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