View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10151A_low_2 (Length: 600)

Name: NF10151A_low_2
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10151A_low_2
NF10151A_low_2
[»] chr3 (11 HSPs)
chr3 (27-411)||(6557675-6558058)
chr3 (5-415)||(6848003-6848414)
chr3 (6-416)||(6526423-6526833)
chr3 (67-351)||(6788534-6788826)
chr3 (519-576)||(6557623-6557680)
chr3 (97-222)||(6549360-6549486)
chr3 (340-409)||(6549226-6549295)
chr3 (336-429)||(6451810-6451903)
chr3 (144-189)||(8467998-8468043)
chr3 (434-493)||(6548945-6549003)
chr3 (431-489)||(6797722-6797781)
[»] scaffold0425 (1 HSPs)
scaffold0425 (6-385)||(11160-11540)
[»] chr4 (2 HSPs)
chr4 (430-479)||(31981775-31981825)
chr4 (504-545)||(31981734-31981775)
[»] chr8 (1 HSPs)
chr8 (433-493)||(42151269-42151329)


Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 27 - 411
Target Start/End: Complemental strand, 6558058 - 6557675
Alignment:
Q  27 aagaataacagacaatcagagtaaacagaaataaaaaagatgggccataaagtcagaatatggtgtatgtcaatttgttgtagacaactttgaaacgtag 126  Q
    ||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||| |||    
T  6558058 aagaaaaacagacaatcagcgtaaacagaa-taaaaaagatgggccataaagtcagattatggtgtatgtcaatttgttgcagacagctttgaaacatag 6557960  T
Q  127 tttcggaagacatttataaaagtaagtgaaacatgtttcattataatgcttgaatacaaaccacgaacaaattggaatggatggaattcacacaatgacg 226  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |     
T  6557959 tttcagaagacacttataaaagtaagtgaaacatgtttcattataatgcttgaatacaaaccatgaacaaattggaatggatggaattcacacaatgtca 6557860  T
Q  227 gactcttccctcccacacatgatcatgaggctctatctcgaatccaaatcatcgttggatgaaagaaacatacactgacatttctttgttgcgaatgtgt 326  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  6557859 gactcttcccttccacacatgatcatgaggctctatctcgaatccaaatcatcgttggatgaaagaaacataaactgaaatttctttgttgcgaatgtgt 6557760  T
Q  327 gtgccctgctacctcttttttgcagcaagaacaaagccttatctacctaaaccatgtatgaaacagaaagtaagcagattgtaca 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6557759 gtgccctgctacctcttttttgcagcaagaacaaagccttatctacctaaaccatgtatgaaacagaaagtaagcagattgtaca 6557675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 5 - 415
Target Start/End: Complemental strand, 6848414 - 6848003
Alignment:
Q  5 gtgtttcctgggaaggcacaagaagaataacagacaatcagagtaaacagaaataaaaaagatgggccataaagtcagaatatggtgtatgtcaatttgt 104  Q
    ||||||||||||||| ||||||||||| ||||||||||||| |||||||||| ||||||||||||  ||||||||||||| |||||||||| ||||||||    
T  6848414 gtgtttcctgggaagacacaagaagaaaaacagacaatcagcgtaaacagaa-taaaaaagatggctcataaagtcagaacatggtgtatgacaatttgt 6848316  T
Q  105 tgtagacaactttgaaacgtagtttcggaagacatttataaaagtaagtgaaacatgtttcattataatgcttgaatacaaaccacgaacaaattggaat 204  Q
    || |||  |||||||||| ||||||| |||||| ||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||    
T  6848315 tgcagaacactttgaaacatagtttcagaagacctttataaaagtaagtgaaatatatttcattataatgcttgaatacaaaccatgaacaaattggaat 6848216  T
Q  205 ggatggaattcacacaatgacggactcttccct--cccacacatgatcatgaggctctatctcgaatccaaatcatcgttggatgaaagaaacatacact 302  Q
    |||||||||||| |||||| | | |||||||||  ||| |||||||||| |||||||||  |||| || |||||||| |||||||||||||||| | ||     
T  6848215 ggatggaattcaaacaatgtcagcctcttcccttgcccgcacatgatcacgaggctctacgtcgagtctaaatcatctttggatgaaagaaacaaaaacc 6848116  T
Q  303 gacatttctttgttgcgaatgtgtgtgccctgctacctcttttttgcagcaagaacaaagccttatctacctaaaccatgtatgaaacagaaagtaagca 402  Q
     | ||||||||||||||||| || |||||||||||||||||||||  ||||||||||| |||||||||| |||||||||||||  |||||||||||||||    
T  6848115 aaaatttctttgttgcgaatttgggtgccctgctacctcttttttatagcaagaacaatgccttatctatctaaaccatgtatttaacagaaagtaagca 6848016  T
Q  403 gattgtacattaa 415  Q
    |||| || |||||    
T  6848015 gattttaaattaa 6848003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 6 - 416
Target Start/End: Complemental strand, 6526833 - 6526423
Alignment:
Q  6 tgtttcctgggaaggcacaagaagaataacagacaatcagagtaaacagaaataaaaaagatgggccataaagtcagaatatggtgtatgtcaatttgtt 105  Q
    |||||||||||||| ||||||||||| ||||||||||||| |||||||||| ||||||||||||  |||||||||||||||||||||||| |||||||||    
T  6526833 tgtttcctgggaagacacaagaagaaaaacagacaatcagcgtaaacagaa-taaaaaagatggctcataaagtcagaatatggtgtatgacaatttgtt 6526735  T
Q  106 gtagacaactttgaaacgtagtttcggaagacatttataaaagtaagtgaaacatgtttcattataatgcttgaatacaaaccacgaacaaattggaatg 205  Q
    | |||  |||||||||| ||||||  |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  6526734 gcagaacactttgaaacatagttttagaagacctttataaaagtaagtgaaatatgtttcattataatgcttgaatacaaaccatgaacaaattggaatg 6526635  T
Q  206 gatggaattcacacaatgacggactcttccct--cccacacatgatcatgaggctctatctcgaatccaaatcatcgttggatgaaagaaacatacactg 303  Q
    ||||||||||| |||||| | | |||||||||  |||||||||||||| |||||||||  |||| || |||||||| |||||||||||||||| | ||      
T  6526634 gatggaattcaaacaatgtcagcctcttcccttgcccacacatgatcacgaggctctacgtcgagtctaaatcatctttggatgaaagaaacaaaaacca 6526535  T
Q  304 acatttctttgttgcgaatgtgtgtgccctgctacctcttttttgcagcaagaacaaagccttatctacctaaaccatgtatgaaacagaaagtaagcag 403  Q
    | ||||||||||||||||  ||||||||||||||||||||||||  ||||||||||| |||||||||| ||||||||||||   |||||||||| |||||    
T  6526534 aaatttctttgttgcgaaattgtgtgccctgctacctcttttttatagcaagaacaatgccttatctatctaaaccatgtactgaacagaaagt-agcag 6526436  T
Q  404 attgtacattaaa 416  Q
    ||| || ||||||    
T  6526435 attttaaattaaa 6526423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 67 - 351
Target Start/End: Complemental strand, 6788826 - 6788534
Alignment:
Q  67 tgggccataaagtcagaatatggtgtatgtcaatttgttgtagacaactttgaaacgta----gtttcggaagacatttataaaagtaagtgaaacatgt 162  Q
    |||| |||||||| |||||||| ||||||   |||||||| | |||| |||||||| ||    ||||| ||| |  ||||||||||||||||||| ||||    
T  6788826 tgggacataaagttagaatatgttgtatgaatatttgttgcatacaaatttgaaacatatatagtttcagaataactttataaaagtaagtgaaatatgt 6788727  T
Q  163 ttcattataatgcttgaatacaaaccacgaacaaattggaatggatggaattcacacaatgacggactcttccctcccaca---catgatcatgaggctc 259  Q
    ||||||||||||||||||||||||||| |||||||| | |||||||| ||||||||||||| | | |||||||||  | ||   || ||||||||| |||    
T  6788726 ttcattataatgcttgaatacaaaccatgaacaaatcgcaatggatgaaattcacacaatgtcagcctcttcccttgcccatgtcaagatcatgagactc 6788627  T
Q  260 tatctcgaatccaaatcatcgttggatgaaagaaacatacactgaca-tttctttgttgcgaatgtgtgtgccctgctacctcttttttgcag 351  Q
    ||| | ||||||||| || | |||||||||||||||| | ||  | | |||||||||||||||||||  |||| |||||| ||||||| ||||    
T  6788626 tatgttgaatccaaaacacctttggatgaaagaaacaaagaccaaaattttctttgttgcgaatgtgcatgccatgctacatctttttagcag 6788534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 519 - 576
Target Start/End: Complemental strand, 6557680 - 6557623
Alignment:
Q  519 tgtacacaggcacatcatatgcagcagtttatatctaataacttccttatgtatggca 576  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6557680 tgtacacaggcacatcatatgcagcagtttatatctaataacttccttatgtatggca 6557623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 97 - 222
Target Start/End: Complemental strand, 6549486 - 6549360
Alignment:
Q  97 caatttgttgtagacaactttgaaacgtagtttcgg-aagacatttataaaagtaagtgaaacatgtttcattataatgcttgaatacaaaccacgaaca 195  Q
    |||||||||| | | || |||||||| ||||||| | || || |||||||| |||| ||||| |||||| |||||||||||||||||||||||| | |||    
T  6549486 caatttgttgcaaataaatttgaaacatagtttcagtaaaacctttataaatgtaaatgaaatatgttttattataatgcttgaatacaaaccatgtaca 6549387  T
Q  196 aattggaatggatggaattcacacaat 222  Q
    ||||||||| |||||||| ||||||||    
T  6549386 aattggaatagatggaatccacacaat 6549360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 340 - 409
Target Start/End: Complemental strand, 6549295 - 6549226
Alignment:
Q  340 tcttttttgcagcaagaacaaagccttatctacctaaaccatgtatgaaacagaaagtaagcagattgta 409  Q
    ||||||||||||||||||||  | ||||||||||||||||||||| ||||||||||||||||||||||||    
T  6549295 tcttttttgcagcaagaacactgtcttatctacctaaaccatgtacgaaacagaaagtaagcagattgta 6549226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 336 - 429
Target Start/End: Complemental strand, 6451903 - 6451810
Alignment:
Q  336 tacctcttttttgcagcaagaacaaagccttatctacctaaaccatgtatgaaacagaaagtaagcagattgtacattaaattacccttaaaat 429  Q
    ||||| ||| |||||||||||||||  | || ||||||||||||||||| |||||| |||  |||||| ||||| ||| |||||||||||||||    
T  6451903 tacctttttgttgcagcaagaacaatccgttctctacctaaaccatgtacgaaacaaaaatcaagcagtttgtaaatttaattacccttaaaat 6451810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 144 - 189
Target Start/End: Original strand, 8467998 - 8468043
Alignment:
Q  144 aaaagtaagtgaaacatgtttcattataatgcttgaatacaaacca 189  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||    
T  8467998 aaaagttagtgaaacatgtttctttataatgcttgaatacaaacca 8468043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 434 - 493
Target Start/End: Complemental strand, 6549003 - 6548945
Alignment:
Q  434 tagaataagaggtgaaatctccaaatcattattagctttcacaagtgtatcccctaagtt 493  Q
    ||||||||||| |||||| |||||||||||| |||||| |||||||||||||| ||||||    
T  6549003 tagaataagagctgaaatgtccaaatcatta-tagcttgcacaagtgtatcccgtaagtt 6548945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 431 - 489
Target Start/End: Complemental strand, 6797781 - 6797722
Alignment:
Q  431 atttagaataagaggtgaaatctccaaatcatt-attagctttcacaagtgtatccccta 489  Q
    |||||||||  ||| |||||||||||||||||| |||||||| |||||||||||| ||||    
T  6797781 atttagaatgtgagatgaaatctccaaatcattaattagcttgcacaagtgtatcaccta 6797722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 203; Significance: 1e-110; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 6 - 385
Target Start/End: Complemental strand, 11540 - 11160
Alignment:
Q  6 tgtttcctgggaaggcacaagaagaataacagacaatcagagtaaacagaaataaaaaagatgggccataaagtcagaatatggtgtatgtcaatttgtt 105  Q
    |||||||||||||| ||||||||||| ||||||||||||| |||||||||| ||| ||||||||  |||||||||||||||||||||||| |||||||||    
T  11540 tgtttcctgggaagacacaagaagaaaaacagacaatcagcgtaaacagaa-taataaagatggctcataaagtcagaatatggtgtatgacaatttgtt 11442  T
Q  106 gtagacaactttgaaacgtagtttcggaagacatttataaaagtaagtgaaacatgtttcattataatgcttgaatacaaaccacgaacaaattggaatg 205  Q
    | |||  |||||||||| ||||||| |||||| ||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||    
T  11441 gcagaacactttgaaacatagtttcagaagacctttataaaagtaagtgaaatatttttcattataatgcttgaatacaaaccatgaacaaattggaatg 11342  T
Q  206 gatggaattcacacaatgacggactcttccct--cccacacatgatcatgaggctctatctcgaatccaaatcatcgttggatgaaagaaacatacactg 303  Q
    ||||||||||| |||||| | | |||||||||  ||| |||||||||| |||||||||  |||| || |||||||| |||| ||||||||||| | ||      
T  11341 gatggaattcaaacaatgtcagcctcttcccttgcccgcacatgatcacgaggctctacgtcgagtctaaatcatctttggctgaaagaaacaaaaacca 11242  T
Q  304 acatttctttgttgcgaatgtgtgtgccctgctacctcttttttgcagcaagaacaaagccttatctacctaaaccatgtat 385  Q
    | |||||| |||||| ||| ||||||||||||||||||||||||  ||||||||||| |||||||||| |||||||||||||    
T  11241 aaatttctctgttgcaaatttgtgtgccctgctacctcttttttatagcaagaacaatgccttatctatctaaaccatgtat 11160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 430 - 479
Target Start/End: Complemental strand, 31981825 - 31981775
Alignment:
Q  430 gatttagaataagaggtgaaatct-ccaaatcattattagctttcacaagt 479  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  31981825 gatttagaataagaggtgaaatgtaccaaatcattattagctttcacaagt 31981775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 504 - 545
Target Start/End: Complemental strand, 31981775 - 31981734
Alignment:
Q  504 tatcaaaccgttttgtgtacacaggcacatcatatgcagcag 545  Q
    ||||||||  ||||||||||||||||||||||||||||||||    
T  31981775 tatcaaactattttgtgtacacaggcacatcatatgcagcag 31981734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 433 - 493
Target Start/End: Original strand, 42151269 - 42151329
Alignment:
Q  433 ttagaataagaggtgaaatctccaaatcattattagctttcacaagtgtatcccctaagtt 493  Q
    ||||||| | || |||||||||||||| ||||||| ||| ||||| |||||| ||||||||    
T  42151269 ttagaatgaaagatgaaatctccaaattattattaacttgcacaaatgtatcacctaagtt 42151329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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