View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151A_low_202 (Length: 238)
Name: NF10151A_low_202
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_low_202 |
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| [»] chr3 (8 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 9370475 - 9370252
Alignment:
| Q |
15 |
atcaaattcccactcgtacatgattccgaagactaccattcctcnnnnnnngaaatcattgagtccctcaacaataccaactcaacattctattacctct |
114 |
Q |
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| T |
9370475 |
atcaaattcccactcgtatatgattccggaaactaccattcctcagaaaaagaaatcattgattccctcaacaataccaactcaccattatgttacctct |
9370376 |
T |
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| Q |
115 |
ccaaacgcactctcgtccttgtcaagccaccacaacatggaaaaaccctaattcgtcgtcgtccttggttgattagagttacacaaaactcacatggaaa |
214 |
Q |
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| T |
9370375 |
ccaaacgcactctcgtccttgtcaagccaccacaacatggaaaaaccctaattcgtcgtcgtccttggttgattagagttacacaaaactcacatggaaa |
9370276 |
T |
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| Q |
215 |
aactaaattcttcgacccattcat |
238 |
Q |
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| T |
9370275 |
aactaaattcttcaacccagtcat |
9370252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 20 - 238
Target Start/End: Complemental strand, 9348816 - 9348598
Alignment:
| Q |
20 |
attcccactcgtacatgattccgaagactaccattcctcnnnnnnngaaatcattgagtccctcaacaataccaactcaacattctattacctctccaaa |
119 |
Q |
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| T |
9348816 |
attcccactcgtacatgattccagaaactaccatctctcagaaaaagaaatcattgattccctcaacaataccaactcaacattctattacctctccaaa |
9348717 |
T |
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| Q |
120 |
cgcactctcgtccttgtcaagccaccacaacatggaaaaaccctaattcgtcgtcgtccttggttgattagagttacacaaaactcacatggaaaaacta |
219 |
Q |
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| T |
9348716 |
cgcactctcgtccttgtcaggccaccacaacatggaaaaaccccaattcatcgtcgtccttggttgattagagttacacaaaactcacatggaaaaacta |
9348617 |
T |
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| Q |
220 |
aattcttcgacccattcat |
238 |
Q |
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| T |
9348616 |
aattcttcgacccattcat |
9348598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 9341396 - 9341327
Alignment:
| Q |
157 |
aaaccctaattcgtcgtcgtccttggttgattagagttacacaaaactcacatggaaaaactaaattctt |
226 |
Q |
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| T |
9341396 |
aaaccctaattcctcgtcgtccttggttgattagatttactcaaaactcacatggcaaaaccaaactctt |
9341327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 9408006 - 9407962
Alignment:
| Q |
173 |
tcgtccttggttgattagagttacacaaaactcacatggaaaaac |
217 |
Q |
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| T |
9408006 |
tcgtccttggttgattagagttacccaaaactcacatggcaaaac |
9407962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 216
Target Start/End: Complemental strand, 9426213 - 9426170
Alignment:
| Q |
173 |
tcgtccttggttgattagagttacacaaaactcacatggaaaaa |
216 |
Q |
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| T |
9426213 |
tcgtccttggttgattagagttacccaaaactcacatggcaaaa |
9426170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 216
Target Start/End: Original strand, 9441257 - 9441300
Alignment:
| Q |
173 |
tcgtccttggttgattagagttacacaaaactcacatggaaaaa |
216 |
Q |
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| T |
9441257 |
tcgtccttggttgattagagttacccaaaactcacatggcaaaa |
9441300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 216
Target Start/End: Complemental strand, 9417210 - 9417167
Alignment:
| Q |
173 |
tcgtccttggttgattagagttacacaaaactcacatggaaaaa |
216 |
Q |
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| T |
9417210 |
tcgtccttggttgatcagagttacccaaaactcacatggcaaaa |
9417167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 206
Target Start/End: Complemental strand, 9353587 - 9353538
Alignment:
| Q |
157 |
aaaccctaattcgtcgtcgtccttggttgattagagttacacaaaactca |
206 |
Q |
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| T |
9353587 |
aaaccctaattcgtcgtcggccttggttgatacgaattacccaaaactca |
9353538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 250825 - 250861
Alignment:
| Q |
170 |
tcgtcgtccttggttgattagagttacacaaaactca |
206 |
Q |
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| T |
250825 |
tcgtcgtccttggttgtttagaattacacaaaactca |
250861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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