View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10151A_low_203 (Length: 238)

Name: NF10151A_low_203
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10151A_low_203
NF10151A_low_203
[»] chr1 (4 HSPs)
chr1 (21-217)||(7386417-7386613)
chr1 (44-180)||(19991215-19991350)
chr1 (43-127)||(19322649-19322733)
chr1 (186-217)||(19322751-19322782)
[»] chr5 (3 HSPs)
chr5 (20-217)||(4925202-4925404)
chr5 (20-180)||(35205787-35205947)
chr5 (20-161)||(35211203-35211344)
[»] chr2 (2 HSPs)
chr2 (19-115)||(39375508-39375604)
chr2 (174-217)||(39375627-39375670)
[»] chr3 (3 HSPs)
chr3 (22-180)||(52314493-52314651)
chr3 (24-180)||(53464903-53465059)
chr3 (48-160)||(1995794-1995906)
[»] chr4 (2 HSPs)
chr4 (21-177)||(23563558-23563714)
chr4 (21-149)||(48265287-48265415)
[»] chr8 (1 HSPs)
chr8 (19-136)||(40278487-40278604)
[»] chr7 (1 HSPs)
chr7 (22-160)||(45888806-45888944)


Alignment Details
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 21 - 217
Target Start/End: Complemental strand, 7386613 - 7386417
Alignment:
Q  21 ctaagagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagtt 120  Q
    |||||||||||||||||| |  |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  7386613 ctaagagcatacacatcgcccatccatatgggtggtatcacactaaccaatgctcttgtgtcataatatcatggataattggctttggaattgagtagtt 7386514  T
Q  121 aaactatacatggtagcaatgcattactacgtttcttttccagtaattgttagattttgtaatactttgagttttatttcttttaattaatagtata 217  Q
    ||| ||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7386513 aaattatacatggtagcaatgcattactacgttccttttcctgtaattgtcagattttgtaatactttgagttttatttcttttaattaatagtata 7386417  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 44 - 180
Target Start/End: Original strand, 19991215 - 19991350
Alignment:
Q  44 ccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagttaaactatacatggtagcaatgca 143  Q
    |||||||||||||||||||||  |||||||| | ||||||||| ||||| |||||||||| ||| ||||||||||||||||||| |||||||  |||| |    
T  19991215 ccatatgggtggtatcacactgcccaatgcttttgtgtcataagatcatggataattggcattgaaattgagtagttaaactatccatggtaataatgga 19991314  T
Q  144 ttactacgtttcttttccagtaattgttagattttgt 180  Q
    ||||||| || ||||||| | ||||||| ||||||||    
T  19991315 ttactaccttccttttcctgcaattgtt-gattttgt 19991350  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 43 - 127
Target Start/End: Original strand, 19322649 - 19322733
Alignment:
Q  43 tccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagttaaactat 127  Q
    |||||||||||||||| ||| ||||||| | ||| |||||||||||||||  |||||||||||| ||||||||||||||||||||    
T  19322649 tccatatgggtggtattacaataaccaacgttcttgtgtcataatatcatgaataattggctttagaattgagtagttaaactat 19322733  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 217
Target Start/End: Original strand, 19322751 - 19322782
Alignment:
Q  186 tttgagttttatttcttttaattaatagtata 217  Q
    ||||||||||||||||||||||||||||||||    
T  19322751 tttgagttttatttcttttaattaatagtata 19322782  T

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Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 20 - 217
Target Start/End: Complemental strand, 4925404 - 4925202
Alignment:
Q  20 actaagagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagt 119  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  4925404 actaagagcatacgcatcgtctgtccatatgggtggtatcacactaaccaatgctcttgtgtcataatatcatggataattggctttggaattgagtagt 4925305  T
Q  120 taaactatacatggtagcaatgcattactacgtttcttttccagtaattgttagattttgt-----------aatactttgagttttatttcttttaatt 208  Q
    |||||||||||||||| |||||||||||||||      |||| |||||||||||||||| |           |||||||||||| |||||||||||||||    
T  4925304 taaactatacatggtaacaatgcattactacg------ttcctgtaattgttagattttatacatattttagaatactttgagtattatttcttttaatt 4925211  T
Q  209 aatagtata 217  Q
    |||||||||    
T  4925210 aatagtata 4925202  T

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Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 180
Target Start/End: Complemental strand, 35205947 - 35205787
Alignment:
Q  20 actaagagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagt 119  Q
    ||||||||||| ||||||| |||  |||||||||||||||||| || |||||||| | ||||||||| |||||  ||||||||| ||| |||||||| ||    
T  35205947 actaagagcatgcacatcgcctgcacatatgggtggtatcacattacccaatgcttttgtgtcataagatcatgaataattggcattgaaattgagtggt 35205848  T
Q  120 taaactatacatggtagcaatgcattactacgtttcttttccagtaattgttagattttgt 180  Q
    |||||||| ||||| || ||||||||||| | || ||||||| | ||||||  ||||||||    
T  35205847 taaactatccatggaagtaatgcattactgccttccttttcctgcaattgtctgattttgt 35205787  T

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Target: chr5; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 35211203 - 35211344
Alignment:
Q  20 actaagagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagt 119  Q
    ||||||||||| ||||||  |||  |||||||||||||||||| || |||||||| | ||||||||| |||||  ||||||||| ||| |||||||| ||    
T  35211203 actaagagcatgcacatcacctgcacatatgggtggtatcacattacccaatgcttttgtgtcataagatcatgaataattggcattgaaattgagtggt 35211302  T
Q  120 taaactatacatggtagcaatgcattactacgtttcttttcc 161  Q
    |||||||| |||||||| ||||||||||| | || |||||||    
T  35211303 taaactatccatggtagtaatgcattactgccttccttttcc 35211344  T

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Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 39375508 - 39375604
Alignment:
Q  19 cactaagagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgag 115  Q
    |||||||||||||||||| | ||||||||||||||||||||| |||||||||| |||| ||||||||||||||| ||||||||||||||||||||||    
T  39375508 cactaagagcatacacattgcctgtccatatgggtggtatcatactaaccaatactcttgtgtcataatatcatggataattggctttggaattgag 39375604  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 39375627 - 39375670
Alignment:
Q  174 attttgtaatactttgagttttatttcttttaattaatagtata 217  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||    
T  39375627 attttgtaatactttaagttttatttcttttaattaataatata 39375670  T

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Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 22 - 180
Target Start/End: Complemental strand, 52314651 - 52314493
Alignment:
Q  22 taagagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagtta 121  Q
    ||||||||| ||||||| |||  |||||||||||||||||| |  |||||||| | ||||||||| |||||  ||||||||| ||| |||||||||||||    
T  52314651 taagagcatgcacatcgcctgcacatatgggtggtatcacattgcccaatgcttttgtgtcataagatcatgaataattggcattgaaattgagtagtta 52314552  T
Q  122 aactatacatggtagcaatgcattactacgtttcttttccagtaattgttagattttgt 180  Q
    |||||| |||||||| ||||||||||||| || ||||||| | ||||||  ||||||||    
T  52314551 aactatccatggtagtaatgcattactaccttccttttcctgcaattgtctgattttgt 52314493  T

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Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 24 - 180
Target Start/End: Complemental strand, 53465059 - 53464903
Alignment:
Q  24 agagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagttaaa 123  Q
    ||||||| ||||||| |||  |||||||||||||||||| |  |||||||| | ||||||||| |||||  ||||||||| ||| |||||||||||||||    
T  53465059 agagcatgcacatcgcctgcacatatgggtggtatcacattgcccaatgcttttgtgtcataagatcatgaataattggcattgaaattgagtagttaaa 53464960  T
Q  124 ctatacatggtagcaatgcattactacgtttcttttccagtaattgttagattttgt 180  Q
    |||| |||||||| ||||||||||||| || ||||||| | ||||||  ||||||||    
T  53464959 ctatccatggtagtaatgcattactaccttccttttcctgcaattgtctgattttgt 53464903  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 160
Target Start/End: Complemental strand, 1995906 - 1995794
Alignment:
Q  48 atgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagttaaactatacatggtagcaatgcattac 147  Q
    ||||||||||  ||||| || ||||| || | ||||||||||| | |||||||||| |||||  ||||||| ||||| |  ||| ||||||||||||| |    
T  1995906 atgggtggtaatacactgactaatgcacttgagtcataatatcttggataattggcattggatatgagtagctaaaccaaccatagtagcaatgcattgc 1995807  T
Q  148 tacgtttcttttc 160  Q
     ||| ||||||||    
T  1995806 cacgattcttttc 1995794  T

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Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 21 - 177
Target Start/End: Complemental strand, 23563714 - 23563558
Alignment:
Q  21 ctaagagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagtt 120  Q
    |||||||||| ||||||| |||   |||||||||||||||||||  |||||||| | ||||||||| ||||| |||||||| | ||| ||||||||||||    
T  23563714 ctaagagcatgcacatcggctgcatatatgggtggtatcacactgcccaatgcttttgtgtcataagatcatggataattgacattgaaattgagtagtt 23563615  T
Q  121 aaactatacatggtagcaatgcattactacgtttcttttccagtaattgttagattt 177  Q
    ||||||| |||||| | ||||||||||||| || ||||||| | |||||| ||||||    
T  23563614 aaactatccatggtggtaatgcattactaccttccttttcctgcaattgtcagattt 23563558  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 21 - 149
Target Start/End: Complemental strand, 48265415 - 48265287
Alignment:
Q  21 ctaagagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagtt 120  Q
    |||||| ||| ||||||| |||  ||||||||||||||||||||  |||||||| | ||||||||| ||||| |||||||||| ||| ||||||||||||    
T  48265415 ctaagaacatgcacatcgcctgcacatatgggtggtatcacactgtccaatgcttttgtgtcataagatcatggataattggcattgaaattgagtagtt 48265316  T
Q  121 aaactatacatggtagcaatgcattacta 149  Q
    ||||||| |||||||| ||||||||||||    
T  48265315 aaactatccatggtagtaatgcattacta 48265287  T

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Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 40278487 - 40278604
Alignment:
Q  19 cactaagagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtag 118  Q
    |||| ||||||||||||||| |||  ||||||||||||||||||||  |||||||| | ||||||||| ||||| |||||||| | ||| ||||||||||    
T  40278487 cacttagagcatacacatcgcctgcacatatgggtggtatcacactggccaatgcttttgtgtcataaaatcatggataattgacattgaaattgagtag 40278586  T
Q  119 ttaaactatacatggtag 136  Q
    ||||||||| ||||||||    
T  40278587 ttaaactatccatggtag 40278604  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 160
Target Start/End: Complemental strand, 45888944 - 45888806
Alignment:
Q  22 taagagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagtta 121  Q
    ||||||||||||||||||| ||| | || |||||||  ||| ||||||||||| | |||||||| || | | |||||||||| |||||  ||||||| ||    
T  45888944 taagagcatacacatcgtcggtcaaaataggtggtaatacattaaccaatgcttttgtgtcatagtaacttggataattggcattggatatgagtagcta 45888845  T
Q  122 aactatacatggtagcaatgcattactacgtttcttttc 160  Q
    || ||| ||| || |||||||| | | ||| ||||||||    
T  45888844 aattatccatagttgcaatgcactgccacggttcttttc 45888806  T

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