View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10151A_low_205 (Length: 237)

Name: NF10151A_low_205
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10151A_low_205
NF10151A_low_205
[»] chr7 (14 HSPs)
chr7 (24-129)||(7876755-7876860)
chr7 (24-124)||(8647777-8647877)
chr7 (23-129)||(6790485-6790591)
chr7 (24-132)||(8668541-8668649)
chr7 (24-132)||(13332068-13332176)
chr7 (24-121)||(8655425-8655522)
chr7 (24-124)||(3148447-3148547)
chr7 (24-112)||(10492939-10493027)
chr7 (48-124)||(1302411-1302487)
chr7 (45-124)||(8660341-8660420)
chr7 (30-121)||(8630310-8630401)
chr7 (24-109)||(17269176-17269261)
chr7 (24-112)||(27829283-27829371)
chr7 (33-112)||(8584474-8584553)
[»] chr5 (2 HSPs)
chr5 (24-129)||(42554108-42554213)
chr5 (24-123)||(28221023-28221122)
[»] chr1 (4 HSPs)
chr1 (24-109)||(15596135-15596220)
chr1 (24-127)||(4677463-4677566)
chr1 (23-125)||(34465173-34465275)
chr1 (67-129)||(52549018-52549080)
[»] chr8 (1 HSPs)
chr8 (24-112)||(43745897-43745985)
[»] chr4 (5 HSPs)
chr4 (24-124)||(9322990-9323090)
chr4 (24-124)||(9334962-9335062)
chr4 (24-124)||(9377469-9377569)
chr4 (33-125)||(30776202-30776294)
chr4 (33-109)||(35133539-35133615)
[»] chr2 (5 HSPs)
chr2 (24-112)||(43626396-43626484)
chr2 (68-126)||(16656524-16656582)
chr2 (75-124)||(12244329-12244378)
chr2 (24-109)||(7543353-7543438)
chr2 (75-124)||(14705590-14705639)
[»] chr6 (1 HSPs)
chr6 (24-112)||(28911382-28911470)


Alignment Details
Target: chr7 (Bit Score: 102; Significance: 9e-51; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 24 - 129
Target Start/End: Complemental strand, 7876860 - 7876755
Alignment:
Q  24 ccttgttcattgtgaataatttcgactctattgtgttcatcaagccacacagcaacacaggaatacgttgttccaaggtctattcccaccgcacgtcctt 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7876860 ccttgttcattgtgaataatttcgactctattgtgttcatcaagccacacagcaacacaggaatacgttgttccaaggtctattcccaccgcacgtcctt 7876761  T
Q  124 catatt 129  Q
    | ||||    
T  7876760 cgtatt 7876755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 24 - 124
Target Start/End: Original strand, 8647777 - 8647877
Alignment:
Q  24 ccttgttcattgtgaataatttcgactctattgtgttcatcaagccacacagcaacacaggaatacgttgttccaaggtctattcccaccgcacgtcctt 123  Q
    ||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||    
T  8647777 ccttgatcattgtgaataatctcaactctattgtgttcatcaagccacacagcaacacacgaatacgttgttccaaggtctattcccactgcaagtcctt 8647876  T
Q  124 c 124  Q
    |    
T  8647877 c 8647877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 23 - 129
Target Start/End: Original strand, 6790485 - 6790591
Alignment:
Q  23 accttgttcattgtgaataatttcgactctattgtgttcatcaagccacacagcaacacaggaatacgttgttccaaggtctattcccaccgcacgtcct 122  Q
    |||||| |||||||||||||| || ||||||||||||||||||||||||||| ||||||| ||||| |||||||| |||||||||||||| |||| ||||    
T  6790485 accttggtcattgtgaataatctcaactctattgtgttcatcaagccacacaccaacacaagaatatgttgttcccaggtctattcccacagcacatcct 6790584  T
Q  123 tcatatt 129  Q
    || ||||    
T  6790585 tcgtatt 6790591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 8668541 - 8668649
Alignment:
Q  24 ccttgttcattgtgaataatttcgactctattgtgttcatcaagccacacagcaacacaggaatacgttgttccaaggtctattcccaccgcacgtcctt 123  Q
    ||||| |||||||||||||| || ||||| | ||||| ||||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||||||||    
T  8668541 ccttgatcattgtgaataatctcaactctttggtgttgatcaagccacacagcaacacatgaataggttgttccaagatctattcccactgcacgtcctt 8668640  T
Q  124 catattctt 132  Q
    | |||||||    
T  8668641 cgtattctt 8668649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 13332176 - 13332068
Alignment:
Q  24 ccttgttcattgtgaataatttcgactctattgtgttcatcaagccacacagcaacacaggaatacgttgttccaaggtctattcccaccgcacgtcctt 123  Q
    ||||| |||||||||||||| || ||||| | ||||||||||||||||||||||||||| || || |||||||||||||| |||||||| ||||||||||    
T  13332176 ccttgatcattgtgaataatctcaactctttggtgttcatcaagccacacagcaacacatgagtaggttgttccaaggtcgattcccactgcacgtcctt 13332077  T
Q  124 catattctt 132  Q
    | |||||||    
T  13332076 cgtattctt 13332068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 121
Target Start/End: Original strand, 8655425 - 8655522
Alignment:
Q  24 ccttgttcattgtgaataatttcgactctattgtgttcatcaagccacacagcaacacaggaatacgttgttccaaggtctattcccaccgcacgtcc 121  Q
    ||||| |||||||||||||| || ||||||||||| || |||||||||||||||||||| ||||| |||||||| ||||||||||| || ||||||||    
T  8655425 ccttgatcattgtgaataatctcaactctattgtgatcgtcaagccacacagcaacacatgaataggttgttccgaggtctattccgacagcacgtcc 8655522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 124
Target Start/End: Original strand, 3148447 - 3148547
Alignment:
Q  24 ccttgttcattgtgaataatttcgactctattgtgttcatcaagccacacagcaacacaggaatacgttgttccaaggtctattcccaccgcacgtcctt 123  Q
    ||||| |||||||||||||| || ||||| ||||| ||||| ||||| |||||||| || |||||||||||||||||||| |||||||| |||| |||||    
T  3148447 ccttggtcattgtgaataatctcaactctgttgtgctcatcgagccaaacagcaacgcacgaatacgttgttccaaggtcgattcccactgcacatcctt 3148546  T
Q  124 c 124  Q
    |    
T  3148547 c 3148547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 10493027 - 10492939
Alignment:
Q  24 ccttgttcattgtgaataatttcgactctattgtgttcatcaagccacacagcaacacaggaatacgttgttccaaggtctattcccac 112  Q
    ||||| ||||||||||||||||| ||||| | ||||||||||||||| ||||||||||| || || ||||||||||| |||||||||||    
T  10493027 ccttgatcattgtgaataatttcaactctttggtgttcatcaagccatacagcaacacatgagtaggttgttccaagatctattcccac 10492939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 124
Target Start/End: Original strand, 1302411 - 1302487
Alignment:
Q  48 actctattgtgttcatcaagccacacagcaacacaggaatacgttgttccaaggtctattcccaccgcacgtccttc 124  Q
    ||||||||||| |  || ||||||||||||||||| ||||| || ||||||||||||||||| || |||||||||||    
T  1302411 actctattgtgattctccagccacacagcaacacacgaataagtagttccaaggtctattccaacagcacgtccttc 1302487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 124
Target Start/End: Original strand, 8660341 - 8660420
Alignment:
Q  45 tcgactctattgtgttcatcaagccacacagcaacacaggaatacgttgttccaaggtctattcccaccgcacgtccttc 124  Q
    ||||||| |||||| |  || ||||||||||||||||| ||||| |||||||||||||||||||| |  |||||||||||    
T  8660341 tcgactcgattgtgattctccagccacacagcaacacacgaataggttgttccaaggtctattccaatagcacgtccttc 8660420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 121
Target Start/End: Original strand, 8630310 - 8630401
Alignment:
Q  30 tcattgtgaataatttcgactctattgtgttcatcaagccacacagcaacacaggaatacgttgttccaaggtctattcccaccgcacgtcc 121  Q
    |||||||||||||| || ||||| || | ||| || | ||| ||| ||||||| ||||| ||||||||||||||||||||||| ||| ||||    
T  8630310 tcattgtgaataatctcaactctgttcttttcttccaaccaaacaccaacacaagaataggttgttccaaggtctattcccacagcatgtcc 8630401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 109
Target Start/End: Original strand, 17269176 - 17269261
Alignment:
Q  24 ccttgttcattgtgaataatttcgactctattgtgttcatcaagccacacagcaacacaggaatacgttgttccaaggtctattcc 109  Q
    ||||| |||||||| ||||| || ||||||  |||||| ||| |||||||||||||||| || || || || ||||||||||||||    
T  17269176 ccttgatcattgtgtataatctcaactctaccgtgttcttcatgccacacagcaacacatgagtatgtcgtcccaaggtctattcc 17269261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 27829371 - 27829283
Alignment:
Q  24 ccttgttcattgtgaataatttcgactctattgtgttcatcaagccacacagcaacacaggaatacgttgttccaaggtctattcccac 112  Q
    |||||||||||||||||||| || ||||| ||||||| |||  ||||| | ||||| || || |||||||| || ||||| ||||||||    
T  27829371 ccttgttcattgtgaataatctccactctgttgtgttgatcctgccacgctgcaacgcacgagtacgttgtacctaggtcaattcccac 27829283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 8584553 - 8584474
Alignment:
Q  33 ttgtgaataatttcgactctattgtgttcatcaagccacacagcaacacaggaatacgttgttccaaggtctattcccac 112  Q
    ||||||||||| || ||||| || | ||| || | ||| ||| ||||||| ||||| |||||||||||||||||||||||    
T  8584553 ttgtgaataatctcaactctgttcttttcttccaaccaaacaccaacacaagaataggttgttccaaggtctattcccac 8584474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 24 - 129
Target Start/End: Complemental strand, 42554213 - 42554108
Alignment:
Q  24 ccttgttcattgtgaataatttcgactctattgtgttcatcaagccacacagcaacacaggaatacgttgttccaaggtctattcccaccgcacgtcctt 123  Q
    ||||| |||||||||||||| || |||||||| ||||||||   |||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||    
T  42554213 ccttgatcattgtgaataatctcaactctattttgttcatcttcccacacagtaacacacgaatacgttgttccaaggtctattcccactgcacgtcctt 42554114  T
Q  124 catatt 129  Q
    ||||||    
T  42554113 catatt 42554108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 123
Target Start/End: Original strand, 28221023 - 28221122
Alignment:
Q  24 ccttgttcattgtgaataatttcgactctattgtgttcatcaagccacacagcaacacaggaatacgttgttccaaggtctattcccaccgcacgtcctt 123  Q
    ||||| |||||||||||||| || || ||||||||||||||  |||||||||||||||| ||||||||||||||||| ||||||||||| |||| |||||    
T  28221023 ccttgatcattgtgaataatctcaaccctattgtgttcatcttgccacacagcaacacatgaatacgttgttccaagatctattcccacagcacatcctt 28221122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 24 - 109
Target Start/End: Original strand, 15596135 - 15596220
Alignment:
Q  24 ccttgttcattgtgaataatttcgactctattgtgttcatcaagccacacagcaacacaggaatacgttgttccaaggtctattcc 109  Q
    ||||| |||||||| ||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  15596135 ccttggtcattgtggataatctcgactctattctgttcatcaagccacacagcaacacaagaatacgttgttccaaggtctattcc 15596220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 4677566 - 4677463
Alignment:
Q  24 ccttgttcattgtgaataatttcgactctattgtgttcatcaagccacacagcaacacaggaatacgttgttccaaggtctattcccaccgcacgtcctt 123  Q
    ||||||||||||| |||||| || ||||| ||||| |  || ||||||||||||||||| ||||| || |||||||| ||||||||||| ||||||||||    
T  4677566 ccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaagatctattcccacagcacgtcctt 4677467  T
Q  124 cata 127  Q
    ||||    
T  4677466 cata 4677463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 125
Target Start/End: Complemental strand, 34465275 - 34465173
Alignment:
Q  23 accttgttcattgtgaataatttcgactctattgtgttcatcaagccacacagcaacacaggaatacgttgttccaaggtctattcccaccgcacgtcct 122  Q
    |||||| ||||||| |||||| || |||||| ||||||  ||  |||| || |||||||| || || ||||| ||||||||||||||||| |||||||||    
T  34465275 accttggtcattgtcaataatctctactctactgtgttgttcctgccatactgcaacacatgagtaggttgtgccaaggtctattcccacagcacgtcct 34465176  T
Q  123 tca 125  Q
    |||    
T  34465175 tca 34465173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 129
Target Start/End: Complemental strand, 52549080 - 52549018
Alignment:
Q  67 gccacacagcaacacaggaatacgttgttccaaggtctattcccaccgcacgtccttcatatt 129  Q
    |||| ||||||||||| |||||||| || | ||||||||||||||| ||| ||||||| ||||    
T  52549080 gccatacagcaacacatgaatacgtagtacaaaggtctattcccacagcaagtccttcgtatt 52549018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 43745897 - 43745985
Alignment:
Q  24 ccttgttcattgtgaataatttcgactctattgtgttcatcaagccacacagcaacacaggaatacgttgttccaaggtctattcccac 112  Q
    ||||| |||||||||||||| || |||||||| ||||||||  |||||||||||||||| |||||||||||||||||||||||||||||    
T  43745897 ccttgatcattgtgaataatctcaactctattttgttcatcttgccacacagcaacacacgaatacgttgttccaaggtctattcccac 43745985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 24 - 124
Target Start/End: Complemental strand, 9323090 - 9322990
Alignment:
Q  24 ccttgttcattgtgaataatttcgactctattgtgttcatcaagccacacagcaacacaggaatacgttgttccaaggtctattcccaccgcacgtcctt 123  Q
    ||||| |||||||||||||| || ||||| | ||||| ||||||||||||||||||||| ||||| ||||||||||| ||||| ||||| ||||||||||    
T  9323090 ccttgatcattgtgaataatctcaactctttggtgttgatcaagccacacagcaacacaagaataggttgttccaagatctatacccactgcacgtcctt 9322991  T
Q  124 c 124  Q
    |    
T  9322990 c 9322990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 24 - 124
Target Start/End: Complemental strand, 9335062 - 9334962
Alignment:
Q  24 ccttgttcattgtgaataatttcgactctattgtgttcatcaagccacacagcaacacaggaatacgttgttccaaggtctattcccaccgcacgtcctt 123  Q
    ||||| |||||||||||||| || ||||| | ||||| ||||||||||||||||||||| ||||| ||||||||||| ||||| ||||| ||||||||||    
T  9335062 ccttgatcattgtgaataatctcaactctttggtgttgatcaagccacacagcaacacaagaataggttgttccaagatctatacccactgcacgtcctt 9334963  T
Q  124 c 124  Q
    |    
T  9334962 c 9334962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 24 - 124
Target Start/End: Complemental strand, 9377569 - 9377469
Alignment:
Q  24 ccttgttcattgtgaataatttcgactctattgtgttcatcaagccacacagcaacacaggaatacgttgttccaaggtctattcccaccgcacgtcctt 123  Q
    ||||| |||||||||||||| || ||||| | ||||| ||||||||||||||||||||| ||||| ||||||||||| ||||| ||||| ||||||||||    
T  9377569 ccttgatcattgtgaataatctcaactctttggtgttgatcaagccacacagcaacacaagaataggttgttccaagatctatacccactgcacgtcctt 9377470  T
Q  124 c 124  Q
    |    
T  9377469 c 9377469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 125
Target Start/End: Original strand, 30776202 - 30776294
Alignment:
Q  33 ttgtgaataatttcgactctattgtgttcatcaagccacacagcaacacaggaatacgttgttccaaggtctattcccaccgcacgtccttca 125  Q
    ||||| |||||||| ||||| || |  || || ||||| ||||| ||||| || |||||||||||||||||||| ||||| ||| ||||||||    
T  30776202 ttgtggataatttcaactctgtttttctcctccagccaaacagccacacacgagtacgttgttccaaggtctatccccacggcatgtccttca 30776294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 109
Target Start/End: Original strand, 35133539 - 35133615
Alignment:
Q  33 ttgtgaataatttcgactctattgtgttcatcaagccacacagcaacacaggaatacgttgttccaaggtctattcc 109  Q
    |||||||| |||||||||| || |||||  ||  |||| || |||||||| |||||||||||||| |||||||||||    
T  35133539 ttgtgaatgatttcgactcgatagtgttgttcttgccatactgcaacacatgaatacgttgttccgaggtctattcc 35133615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 43626396 - 43626484
Alignment:
Q  24 ccttgttcattgtgaataatttcgactctattgtgttcatcaagccacacagcaacacaggaatacgttgttccaaggtctattcccac 112  Q
    ||||| |||||||| ||||| || |||||  ||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  43626396 ccttggtcattgtggataatctctactcttctgttttcatcaagccacacagcaatacaagaatacgttgttccaaggtctattcccac 43626484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 68 - 126
Target Start/End: Complemental strand, 16656582 - 16656524
Alignment:
Q  68 ccacacagcaacacaggaatacgttgttccaaggtctattcccaccgcacgtccttcat 126  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||    
T  16656582 ccacacagcaacacatgaataagttgttccaaggtctattcccactgcacgtccttcat 16656524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 124
Target Start/End: Complemental strand, 12244378 - 12244329
Alignment:
Q  75 gcaacacaggaatacgttgttccaaggtctattcccaccgcacgtccttc 124  Q
    |||||||| ||||||||||| ||||||||||||||||| |||||||||||    
T  12244378 gcaacacatgaatacgttgtaccaaggtctattcccacggcacgtccttc 12244329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 109
Target Start/End: Original strand, 7543353 - 7543438
Alignment:
Q  24 ccttgttcattgtgaataatttcgactctattgtgttcatcaagccacacagcaacacaggaatacgttgttccaaggtctattcc 109  Q
    ||||| || |||||||| ||||| |||| || ||||| |||  |||| || |||||||| || |||||||| ||||||||||||||    
T  7543353 ccttggtcgttgtgaatgatttcaactcgatagtgttgatcctgccatactgcaacacaagagtacgttgtgccaaggtctattcc 7543438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 14705590 - 14705639
Alignment:
Q  75 gcaacacaggaatacgttgttccaaggtctattcccaccgcacgtccttc 124  Q
    |||||||| || |||||||| ||||||||||||||||| |||| ||||||    
T  14705590 gcaacacatgagtacgttgtaccaaggtctattcccacagcacatccttc 14705639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 28911382 - 28911470
Alignment:
Q  24 ccttgttcattgtgaataatttcgactctattgtgttcatcaagccacacagcaacacaggaatacgttgttccaaggtctattcccac 112  Q
    ||||| |||||||||||||| |  |||| |||||||||||||||||||||| ||||||   |||||||| |||||||||| ||||||||    
T  28911382 ccttgatcattgtgaataatattaactccattgtgttcatcaagccacacaccaacactcaaatacgttattccaaggtcaattcccac 28911470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University