View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151A_low_208 (Length: 237)
Name: NF10151A_low_208
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_low_208 |
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Alignment Details
Target: chr1 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 12123989 - 12123760
Alignment:
| Q |
1 |
aatattcaccacaagaaaaaggatggagacctctccataaaataatatcttaagtctttctttttactagttattttaaactaccaaaatttagttaaga |
100 |
Q |
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| T |
12123989 |
aatattctcaacaagaaaaaggatggagacctctccataaaataatatcttaagtctttcgttttactagttattttaaactaccaaaatttaggtaaga |
12123890 |
T |
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| Q |
101 |
ggttgagaatacaaatagtttannnnnnnnnagaaagataatg-nnnnnnnnngtaagctctccatttaccaatttgattgatccttttgaacttac--- |
196 |
Q |
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| T |
12123889 |
ggttgagaatagaaatag-ttatttttttttagaaagataatgaaaaaaaaaagtaagctcttcatttatcaatttgattgatccttttgaacttactaa |
12123791 |
T |
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| Q |
197 |
--caaagaaaaaacgtcttattcgtttatat |
225 |
Q |
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||||||||||| |||||||||||||||| |
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| T |
12123790 |
agaaaagaaaaaacatcttattcgtttatat |
12123760 |
T |
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